Genomics and breeding innovations for enhancing genetic gain for climate resilience and nutrition traits

P Sinha, VK Singh, A Bohra, A Kumar, JC Reif… - Theoretical and Applied …, 2021 - Springer
Key message Integrating genomics technologies and breeding methods to tweak core
parameters of the breeder's equation could accelerate delivery of climate-resilient and …

Genomics and marker-assisted improvement of vegetable crops

I Simko, M Jia, J Venkatesh, BC Kang… - Critical Reviews in …, 2021 - Taylor & Francis
Vegetables are an integral part of the human diet worldwide. Traditional breeding
approaches have been used extensively to develop new cultivars of vegetables with …

Improved pea reference genome and pan-genome highlight genomic features and evolutionary characteristics

T Yang, R Liu, Y Luo, S Hu, D Wang, C Wang… - Nature …, 2022 - nature.com
Complete and accurate reference genomes and annotations provide fundamental resources
for functional genomics and crop breeding. Here we report a de novo assembly and …

The tomato pan-genome uncovers new genes and a rare allele regulating fruit flavor

L Gao, I Gonda, H Sun, Q Ma, K Bao, DM Tieman… - Nature …, 2019 - nature.com
Modern tomatoes have narrow genetic diversity limiting their improvement potential. We
present a tomato pan-genome constructed using genome sequences of 725 …

Structural variation (SV)-based pan-genome and GWAS reveal the impacts of SVs on the speciation and diversification of allotetraploid cottons

S Jin, Z Han, Y Hu, Z Si, F Dai, L He, Y Cheng, Y Li… - Molecular Plant, 2023 - cell.com
Structural variations (SVs) have long been described as being involved in the origin,
adaption, and domestication of species. However, the underlying genetic and genomic …

Genome of Solanum pimpinellifolium provides insights into structural variants during tomato breeding

X Wang, L Gao, C Jiao, S Stravoravdis… - Nature …, 2020 - nature.com
Solanum pimpinellifolium (SP) is the wild progenitor of cultivated tomato. Because of its
remarkable stress tolerance and intense flavor, SP has been used as an important …

Applications and trends of machine learning in genomics and phenomics for next-generation breeding

S Esposito, D Carputo, T Cardi, P Tripodi - Plants, 2019 - mdpi.com
Crops are the major source of food supply and raw materials for the processing industry. A
balance between crop production and food consumption is continually threatened by plant …

The multi-allelic APRR2 gene is associated with fruit pigment accumulation in melon and watermelon

E Oren, G Tzuri, L Vexler, A Dafna… - Journal of …, 2019 - academic.oup.com
Color and pigment contents are important aspects of fruit quality and consumer acceptance
of cucurbit crops. Here, we describe the independent mapping and cloning of a common …

The genetic basis of tomato aroma

M Martina, Y Tikunov, E Portis, AG Bovy - Genes, 2021 - mdpi.com
Tomato (Solanum lycopersicum L.) aroma is determined by the interaction of volatile
compounds (VOCs) released by the tomato fruits with receptors in the nose, leading to a …

A minimal genome design to maximally guarantee fertile inter-subspecific hybrid rice

P Zhou, Z Wang, X Zhu, Y Tang, L Ye, H Yu, Y Li… - Molecular Plant, 2023 - cell.com
Hybrid rice has made considerable contributions to achieve the ambitious goal of food
security for the world's population. Hybrid rice from indica/xian and japonica/geng …