Lake sedimentary DNA research on past terrestrial and aquatic biodiversity: Overview and recommendations

E Capo, C Giguet-Covex, A Rouillard, K Nota… - Quaternary, 2021 - mdpi.com
The use of lake sedimentary DNA to track the long-term changes in both terrestrial and
aquatic biota is a rapidly advancing field in paleoecological research. Although largely …

Diverse applications of environmental DNA methods in parasitology

D Bass, GD Stentiford, DTJ Littlewood… - Trends in …, 2015 - cell.com
Nucleic acid extraction and sequencing of genes from organisms within environmental
samples encompasses a variety of techniques collectively referred to as environmental DNA …

Discovery of novel intermediate forms redefines the fungal tree of life

MDM Jones, I Forn, C Gadelha, MJ Egan, D Bass… - Nature, 2011 - nature.com
Fungi are the principal degraders of biomass in terrestrial ecosystems and establish
important interactions with plants and animals,,. However, our current understanding of …

Mycoloop: chytrids in aquatic food webs

M Kagami, T Miki, G Takimoto - Frontiers in microbiology, 2014 - frontiersin.org
Parasites are ecologically significant in various ecosystems through their role in shaping
food web structure, facilitating energy transfer, and controlling disease. Here in this review …

Integrating chytrid fungal parasites into plankton ecology: research gaps and needs

T Frenken, E Alacid, SA Berger… - Environmental …, 2017 - Wiley Online Library
Chytridiomycota, often referred to as chytrids, can be virulent parasites with the potential to
inflict mass mortalities on hosts, causing eg changes in phytoplankton size distributions and …

Infrequent marine–freshwater transitions in the microbial world

R Logares, J Bråte, S Bertilsson, JL Clasen… - Trends in …, 2009 - cell.com
Until recently, the evolutionary relationships between marine and freshwater microbes were
unclear, but the use of molecular phylogenies is beginning to shed light on this subject. An …

High-resolution metagenomic reconstruction of the freshwater spring bloom

VS Kavagutti, PA Bulzu, CM Chiriac, MM Salcher… - Microbiome, 2023 - Springer
Background The phytoplankton spring bloom in freshwater habitats is a complex, recurring,
and dynamic ecological spectacle that unfolds at multiple biological scales. Although …

Molecular diversity and distribution of marine fungi across 130 European environmental samples

TA Richards, G Leonard, F Mahé… - … of the Royal …, 2015 - royalsocietypublishing.org
Environmental DNA and culture-based analyses have suggested that fungi are present in
low diversity and in low abundance in many marine environments, especially in the upper …

Fungi in lake ecosystems

CM Wurzbacher, F Bärlocher, HP Grossart - Aquatic Microbial Ecology, 2010 - int-res.com
This review highlights the presence and ecological roles of fungi in lakes, and aims to
stimulate research in aquatic mycology. In the study of lentic systems, this field is an almost …

Overview of freshwater microbial eukaryotes diversity: a first analysis of publicly available metabarcoding data

D Debroas, I Domaizon, JF Humbert… - FEMS Microbiology …, 2017 - academic.oup.com
Although they are widespread, diverse and involved in biogeochemical cycles, microbial
eukaryotes attract less attention than their prokaryotic counterparts in environmental …