Overview of host miRNA properties and their association with epigenetics, long non-coding RNAs, and Xeno-infectious factors
S Heydarzadeh, M Ranjbar, F Karimi, F Seif… - Cell & Bioscience, 2021 - Springer
MicroRNA-derived structures play impressive roles in various biological processes. So
dysregulation of miRNAs can lead to different human diseases. Recent studies have …
dysregulation of miRNAs can lead to different human diseases. Recent studies have …
sRNAbench and sRNAtoolbox 2019: intuitive fast small RNA profiling and differential expression
Since the original publication of sRNAtoolbox in 2015, small RNA research experienced
notable advances in different directions. New protocols for small RNA sequencing have …
notable advances in different directions. New protocols for small RNA sequencing have …
Dissecting heterogeneity in malignant pleural mesothelioma through histo-molecular gradients for clinical applications
Y Blum, C Meiller, L Quetel, N Elarouci, M Ayadi… - Nature …, 2019 - nature.com
Malignant pleural mesothelioma (MPM) is recognized as heterogeneous based both on
histology and molecular profiling. Histology addresses inter-tumor and intra-tumor …
histology and molecular profiling. Histology addresses inter-tumor and intra-tumor …
[HTML][HTML] exceRpt: a comprehensive analytic platform for extracellular RNA profiling
Small RNA sequencing has been widely adopted to study the diversity of extracellular RNAs
(exRNAs) in biofluids; however, the analysis of exRNA samples can be challenging: they are …
(exRNAs) in biofluids; however, the analysis of exRNA samples can be challenging: they are …
sRNAtoolbox: an integrated collection of small RNA research tools
Small RNA research is a rapidly growing field. Apart from microRNAs, which are important
regulators of gene expression, other types of functional small RNA molecules have been …
regulators of gene expression, other types of functional small RNA molecules have been …
A review on recent computational methods for predicting noncoding RNAs
Y Zhang, H Huang, D Zhang, J Qiu… - BioMed research …, 2017 - Wiley Online Library
Noncoding RNAs (ncRNAs) play important roles in various cellular activities and diseases.
In this paper, we presented a comprehensive review on computational methods for ncRNA …
In this paper, we presented a comprehensive review on computational methods for ncRNA …
[HTML][HTML] Plasma vesicle miRNAs for therapy response monitoring in Hodgkin lymphoma patients
MAJ van Eijndhoven, JM Zijlstra, NJ Groenewegen… - JCI insight, 2016 - ncbi.nlm.nih.gov
BACKGROUND. Cell-free circulating nucleic acids, including 22-nt microRNAs (miRNAs),
represent noninvasive biomarkers for treatment response monitoring of cancer patients …
represent noninvasive biomarkers for treatment response monitoring of cancer patients …
[HTML][HTML] Non-invasive prostate cancer detection by measuring miRNA variants (isomiRs) in urine extracellular vesicles
In many cancer types, the expression and function of∼ 22 nucleotide-long microRNAs
(miRNA) is deregulated. Mature miRNAs can be stably detected in extracellular vesicles …
(miRNA) is deregulated. Mature miRNAs can be stably detected in extracellular vesicles …
Integrated molecular characterization of chondrosarcoma reveals critical determinants of disease progression
Chondrosarcomas are primary cancers of cartilaginous tissue with highly contrasting
prognoses. These tumors are defined by recurrent mutations in the IDH genes and other …
prognoses. These tumors are defined by recurrent mutations in the IDH genes and other …
sRNAnalyzer—a flexible and customizable small RNA sequencing data analysis pipeline
X Wu, TK Kim, D Baxter, K Scherler… - Nucleic acids …, 2017 - academic.oup.com
Although many tools have been developed to analyze small RNA sequencing (sRNA-Seq)
data, it remains challenging to accurately analyze the small RNA population, mainly due to …
data, it remains challenging to accurately analyze the small RNA population, mainly due to …