Network science of biological systems at different scales: A review

M Gosak, R Markovič, J Dolenšek, MS Rupnik… - Physics of life …, 2018 - Elsevier
Network science is today established as a backbone for description of structure and function
of various physical, chemical, biological, technological, and social systems. Here we review …

Small-world human brain networks: perspectives and challenges

X Liao, AV Vasilakos, Y He - Neuroscience & Biobehavioral Reviews, 2017 - Elsevier
Modelling the human brain as a complex network has provided a powerful mathematical
framework to characterize the structural and functional architectures of the brain. In the past …

Micro-connectomics: probing the organization of neuronal networks at the cellular scale

M Schröter, O Paulsen, ET Bullmore - Nature Reviews Neuroscience, 2017 - nature.com
Defining the organizational principles of neuronal networks at the cellular scale, or micro-
connectomics, is a key challenge of modern neuroscience. In this Review, we focus on …

Self-organization of in vitro neuronal assemblies drives to complex network topology

PC Antonello, TF Varley, J Beggs, M Porcionatto… - Elife, 2022 - elifesciences.org
Activity-dependent self-organization plays an important role in the formation of specific and
stereotyped connectivity patterns in neural circuits. By combining neuronal cultures, and …

Inverse stochastic resonance in networks of spiking neurons

M Uzuntarla, E Barreto, JJ Torres - PLoS computational biology, 2017 - journals.plos.org
Inverse Stochastic Resonance (ISR) is a phenomenon in which the average spiking rate of a
neuron exhibits a minimum with respect to noise. ISR has been studied in individual …

Network science characteristics of brain-derived neuronal cultures deciphered from quantitative phase imaging data

C Yin, X Xiao, V Balaban, ME Kandel, YJ Lee… - Scientific reports, 2020 - nature.com
Understanding the mechanisms by which neurons create or suppress connections to enable
communication in brain-derived neuronal cultures can inform how learning, cognition and …

Emergence of assortative mixing between clusters of cultured neurons

S Teller, C Granell, M De Domenico… - PLoS computational …, 2014 - journals.plos.org
The analysis of the activity of neuronal cultures is considered to be a good proxy of the
functional connectivity of in vivo neuronal tissues. Thus, the functional complex network …

[HTML][HTML] Self-organization and evolution of structure and function in cultured neuronal networks

LM Ballesteros-Esteban, I Leyva, JA Almendral… - Chaos, Solitons & …, 2023 - Elsevier
Cultured neuronal networks (CNNs) have recently achieved major relevance as an
alternative to in vivo models. While many works investigate the evolution of functional …

From pixels to connections: exploring in vitro neuron reconstruction software for network graph generation

C Hoffmann, E Cho, A Zalesky, MA Di Biase - Communications Biology, 2024 - nature.com
Digital reconstruction has been instrumental in deciphering how in vitro neuron architecture
shapes information flow. Emerging approaches reconstruct neural systems as networks with …

High-order couplings in geometric complex networks of neurons

A Tlaie, I Leyva, I Sendiña-Nadal - Physical Review E, 2019 - APS
We explore the consequences of introducing higher-order interactions in a geometric
complex network of Morris-Lecar neurons. We focus on the regime where traveling …