Assembly, Assessment, and Availability of De novo Generated Eukaryotic Transcriptomes

J Moreton, A Izquierdo, RD Emes - Frontiers in genetics, 2016 - frontiersin.org
De novo assembly of a complete transcriptome without the need for a guiding reference
genome is attractive, particularly where the cost and complexity of generating a eukaryote …

Genomic adaptations to aquatic and aerial life in mayflies and the origin of insect wings

I Almudi, J Vizueta, CDR Wyatt, A de Mendoza… - Nature …, 2020 - nature.com
The evolution of winged insects revolutionized terrestrial ecosystems and led to the largest
animal radiation on Earth. However, we still have an incomplete picture of the genomic …

Evolution of chemosensory gene families in arthropods: insight from the first inclusive comparative transcriptome analysis across spider appendages

J Vizueta, C Frias-Lopez… - Genome biology and …, 2017 - academic.oup.com
Unlike hexapods and vertebrates, in chelicerates, knowledge of the specific molecules
involved in chemoreception comes exclusively from the comparative analysis of genome …

Comparative genomics reveals thousands of novel chemosensory genes and massive changes in chemoreceptor repertories across chelicerates

J Vizueta, J Rozas… - Genome biology and …, 2018 - academic.oup.com
Chemoreception is a widespread biological function that is essential for the survival,
reproduction, and social communication of animals. Though the molecular mechanisms …

Evaluation of the impact of RNA preservation methods of spiders for de novo transcriptome assembly

N Kono, H Nakamura, Y Ito, M Tomita… - Molecular ecology …, 2016 - Wiley Online Library
With advances in high‐throughput sequencing technologies, de novo transcriptome
sequencing and assembly has become a cost‐effective method to obtain comprehensive …

Chance and predictability in evolution: the genomic basis of convergent dietary specializations in an adaptive radiation

J Vizueta, N Macías‐Hernández, MA Arnedo… - Molecular …, 2019 - Wiley Online Library
The coexistence of multiple eco‐phenotypes in independently assembled communities
makes island adaptive radiations the ideal framework to test convergence and parallelism in …

Evolutionary history of major chemosensory gene families across Panarthropoda

J Vizueta, P Escuer, C Frías-López… - Molecular Biology …, 2020 - academic.oup.com
Chemosensory perception is a fundamental biological process of particular relevance in
basic and applied arthropod research. However, apart from insects, there is little knowledge …

Animal multicellularity and polarity without Wnt signaling

Q Schenkelaars, M Pratlong, L Kodjabachian… - Scientific Reports, 2017 - nature.com
Acquisition of multicellularity is a central event in the evolution of Eukaryota. Strikingly,
animal multicellularity coincides with the emergence of three intercellular communication …

A proteotranscriptomic study of silk-producing glands from the orb-weaving spiders

JRA dos Santos-Pinto, FG Esteves, FJ Sialana… - Molecular …, 2019 - pubs.rsc.org
Orb-weaving spiders can produce different silk fibers, which constitute outstanding materials
characterized by their high strength and elasticity. Researchers have tried to reproduce the …

Shifting evolutionary sands: transcriptome characterization of the Aptostichus atomarius species complex

NL Garrison, MS Brewer, JE Bond - BMC Evolutionary Biology, 2020 - Springer
Background Mygalomorph spiders represent a diverse, yet understudied lineage for which
genomic level data has only recently become accessible through high-throughput genomic …