A review of progress in single particle tracking: from methods to biophysical insights

C Manzo, MF Garcia-Parajo - Reports on progress in physics, 2015 - iopscience.iop.org
Optical microscopy has for centuries been a key tool to study living cells with minimum
invasiveness. The advent of single molecule techniques over the past two decades has …

[HTML][HTML] Objective comparison of particle tracking methods

N Chenouard, I Smal, F De Chaumont, M Maška… - Nature …, 2014 - nature.com
Particle tracking is of key importance for quantitative analysis of intracellular dynamic
processes from time-lapse microscopy image data. Because manually detecting and …

Recent advances in optical microscopic methods for single-particle tracking in biological samples

Y Ma, X Wang, H Liu, L Wei, L Xiao - Analytical and bioanalytical chemistry, 2019 - Springer
With the rapid development of optical microscopic techniques, explorations on the chemical
and biological properties of target objects in biological samples at single-molecule/particle …

Coupling between endocytosis and sphingosine kinase 1 recruitment

H Shen, F Giordano, Y Wu, J Chan, C Zhu… - Nature cell …, 2014 - nature.com
Genetic studies have suggested a functional link between cholesterol/sphingolipid
metabolism and endocytic membrane traffic. Here we show that perturbing the cholesterol …

Tracking multiple particles in fluorescence time-lapse microscopy images via probabilistic data association

WJ Godinez, K Rohr - IEEE transactions on medical imaging, 2014 - ieeexplore.ieee.org
Tracking subcellular structures as well as viral structures displayed asparticles' in
fluorescence microscopy images yields quantitative information on the underlying dynamical …

A novel multiple hypothesis based particle tracking method for clathrin mediated endocytosis analysis using fluorescence microscopy

L Liang, H Shen, P De Camilli… - IEEE transactions on …, 2014 - ieeexplore.ieee.org
In order to quantitatively analyze biological images and study underlying mechanisms of the
cellular and subcellular processes, it is often required to track a large number of particles …

[HTML][HTML] PySTACHIO: Python Single-molecule TrAcking stoiCHiometry Intensity and simulatiOn, a flexible, extensible, beginner-friendly and optimized program for …

JW Shepherd, EJ Higgins, AJM Wollman… - Computational and …, 2021 - Elsevier
As camera pixel arrays have grown larger and faster, and optical microscopy techniques
ever more refined, there has been an explosion in the quantity of data acquired during …

Automated single particle detection and tracking for large microscopy datasets

RS Wilson, L Yang, A Dun… - Royal Society …, 2016 - royalsocietypublishing.org
Recent advances in optical microscopy have enabled the acquisition of very large datasets
from living cells with unprecedented spatial and temporal resolutions. Our ability to process …

Automated segmentation and tracking of non-rigid objects in time-lapse microscopy videos of polymorphonuclear neutrophils

S Brandes, Z Mokhtari, F Essig, K Hünniger… - Medical Image …, 2015 - Elsevier
Time-lapse microscopy is an important technique to study the dynamics of various biological
processes. The labor-intensive manual analysis of microscopy videos is increasingly …

[HTML][HTML] BNP-Track: A framework for superresolved tracking

I Sgouralis, LWQ Xu, AP Jalihal, NG Walter, S Pressé - bioRxiv, 2023 - ncbi.nlm.nih.gov
Assessing dynamic processes at single molecule scales is key toward capturing life at the
level of its molecular actors. Widefield superresolution methods, such as STORM, PALM …