Biosensor-assisted titratable CRISPRi high-throughput (BATCH) screening for over-production phenotypes

J Wang, C Li, T Jiang, Y Yan - Metabolic engineering, 2023 - Elsevier
With rapid advances in the development of metabolic pathways and synthetic biology
toolkits, a persisting challenge in microbial bioproduction is how to optimally rewire …

Harnessing non-Watson–Crick's base pairing to enhance CRISPR effectors cleavage activities and enable gene editing in mammalian cells

S Gao, H Guan, H Bloomer, D Wich… - Proceedings of the …, 2024 - National Acad Sciences
Genomic DNA of the cyanophage S-2L virus is composed of 2-aminoadenine (Z), thymine
(T), guanine (G), and cytosine (C), forming the genetic alphabet ZTGC, which violates …

Improvement of floricultural traits in ornamental crops using genome editing tools

PR Jadhav, SB Aglawe, D Harish, YS Wagh… - Journal of Plant …, 2023 - Springer
Floriculture is one of the most promising sectors of the horticulture industry with immense
aesthetic, social, medicinal and economic value. Ornamentals are rich in natural pigments …

Exploring and engineering PAM-diverse Streptococci Cas9 for PAM-directed bifunctional and titratable gene control in bacteria

J Wang, Y Teng, X Gong, J Zhang, Y Wu, L Lou… - Metabolic …, 2023 - Elsevier
The RNA-guided Cas9s serve as powerful tools for programmable gene editing and
regulation; their targeting scopes and efficacies, however, are always constrained by the …

Establishing an Autonomous Cascaded Artificial Dynamic (AutoCAD) regulation system for improved pathway performance

T Jiang, C Li, Y Zou, J Zhang, Q Gan, Y Yan - Metabolic Engineering, 2022 - Elsevier
Endogenous metabolic pathways in microbial cells are usually precisely controlled by
sophisticated regulation networks. However, the lack of such regulations when introducing …

[HTML][HTML] Engineering Cas9: next generation of genomic editors

MA Kovalev, AI Davletshin, DS Karpov - Applied Microbiology and …, 2024 - Springer
The Cas9 endonuclease of the CRISPR/Cas type IIA system from Streptococcus pyogenes
is the heart of genome editing technology that can be used to treat human genetic and viral …

CRISPRactivation-SMS, a message for PAM sequence independent gene up-regulation in Escherichia coli

M Klanschnig, M Cserjan-Puschmann… - Nucleic Acids …, 2022 - academic.oup.com
Governance of the endogenous gene regulatory network enables the navigation of cells
towards beneficial traits for recombinant protein production. CRISPRactivation and …

Expanding the scope of bacterial CRISPR activation with PAM-flexible dCas9 variants

C Kiattisewee, AV Karanjia, M Legut… - ACS synthetic …, 2022 - ACS Publications
CRISPR-Cas transcriptional tools have been widely applied for programmable regulation of
complex biological networks. In comparison to eukaryotic systems, bacterial CRISPR …

In vivo base editing rescues primary hyperoxaluria type 1 in rats

Z Chen, D Zhang, R Zheng, L Yang, Y Huo, D Zhang… - Kidney International, 2024 - Elsevier
Primary hyperoxaluria type 1 (PH1) is a childhood-onset autosomal recessive disease,
characterized by nephrocalcinosis, multiple recurrent urinary calcium oxalate stones, and a …

A self-regulated network for dynamically balancing multiple precursors in complex biosynthetic pathways

Y Zou, J Zhang, J Wang, X Gong, T Jiang, Y Yan - Metabolic Engineering, 2024 - Elsevier
Microbial synthesis has emerged as a promising and sustainable alternative to traditional
chemical synthesis and plant extraction. However, the competition between synthetic …