Phylogenomic approaches to detecting and characterizing introgression

MS Hibbins, MW Hahn - Genetics, 2022 - academic.oup.com
Phylogenomics has revealed the remarkable frequency with which introgression occurs
across the tree of life. These discoveries have been enabled by the rapid growth of methods …

Phylogenomics and the flowering plant tree of life

C Guo, Y Luo, LM Gao, TS Yi, HT Li… - Journal of Integrative …, 2023 - Wiley Online Library
The advances accelerated by next‐generation sequencing and long‐read sequencing
technologies continue to provide an impetus for plant phylogenetic study. In the past …

Global Brassicaceae phylogeny based on filtering of 1,000-gene dataset

KP Hendriks, C Kiefer, IA Al-Shehbaz, CD Bailey… - Current biology, 2023 - cell.com
The mustard family (Brassicaceae) is a scientifically and economically important family,
containing the model plant Arabidopsis thaliana and numerous crop species that feed …

Whole-genome microsynteny-based phylogeny of angiosperms

T Zhao, A Zwaenepoel, JY Xue, SM Kao, Z Li… - Nature …, 2021 - nature.com
Plant genomes vary greatly in size, organization, and architecture. Such structural
differences may be highly relevant for inference of genome evolution dynamics and …

Nested whole-genome duplications coincide with diversification and high morphological disparity in Brassicaceae

N Walden, DA German, EM Wolf, M Kiefer… - Nature …, 2020 - nature.com
Angiosperms have become the dominant terrestrial plant group by diversifying for~ 145
million years into a broad range of environments. During the course of evolution, numerous …

Ghost lineages can invalidate or even reverse findings regarding gene flow

T Tricou, E Tannier, DM de Vienne - PLoS biology, 2022 - journals.plos.org
Introgression, endosymbiosis, and gene transfer, ie, horizontal gene flow (HGF), are
primordial sources of innovation in all domains of life. Our knowledge on HGF relies on …

Different rates of pollen and seed gene flow cause branch‐length and geographic cytonuclear discordance within Asian butternuts

LL Xu, RM Yu, XR Lin, BW Zhang, N Li, K Lin… - New …, 2021 - Wiley Online Library
Topological cytonuclear discordance is commonly observed in plant phylogenetic and
phylogeographic studies, yet few studies have attempted to detect two other forms of …

Mechanism and utilization of ogura cytoplasmic male sterility in cruciferae crops

W Ren, J Si, L Chen, Z Fang, M Zhuang, H Lv… - International Journal of …, 2022 - mdpi.com
Hybrid production using lines with cytoplasmic male sterility (CMS) has become an
important way to utilize heterosis in vegetables. Ogura CMS, with the advantages of …

Cytonuclear Interactions and Subgenome Dominance Shape the Evolution of Organelle-Targeted Genes in the Brassica Triangle of U

S Kan, X Liao, L Lan, J Kong, J Wang… - Molecular biology …, 2024 - academic.oup.com
The interaction and coevolution between nuclear and cytoplasmic genomes are one of the
fundamental hallmarks of eukaryotic genome evolution and, 2 billion yr later, are still major …

Prezygotic barriers effectively limit hybridization in a rapid evolutionary radiation

KA Uckele, OM Vargas, KM Kay - New Phytologist, 2024 - Wiley Online Library
Hybridization is increasingly recognized as an important evolutionary process across the
tree of life. In many clades, phylogenomic approaches have permitted unparalleled insight …