Generative models for molecular discovery: Recent advances and challenges

C Bilodeau, W Jin, T Jaakkola… - Wiley …, 2022 - Wiley Online Library
Abstract Development of new products often relies on the discovery of novel molecules.
While conventional molecular design involves using human expertise to propose …

Geometric deep learning on molecular representations

K Atz, F Grisoni, G Schneider - Nature Machine Intelligence, 2021 - nature.com
Geometric deep learning (GDL) is based on neural network architectures that incorporate
and process symmetry information. GDL bears promise for molecular modelling applications …

Score-based generative modeling in latent space

A Vahdat, K Kreis, J Kautz - Advances in neural information …, 2021 - proceedings.neurips.cc
Score-based generative models (SGMs) have recently demonstrated impressive results in
terms of both sample quality and distribution coverage. However, they are usually applied …

Machine learning of reaction properties via learned representations of the condensed graph of reaction

E Heid, WH Green - Journal of Chemical Information and …, 2021 - ACS Publications
The estimation of chemical reaction properties such as activation energies, rates, or yields is
a central topic of computational chemistry. In contrast to molecular properties, where …

Characterizing uncertainty in machine learning for chemistry

E Heid, CJ McGill, FH Vermeire… - Journal of Chemical …, 2023 - ACS Publications
Characterizing uncertainty in machine learning models has recently gained interest in the
context of machine learning reliability, robustness, safety, and active learning. Here, we …

[HTML][HTML] CLOOME: contrastive learning unlocks bioimaging databases for queries with chemical structures

A Sanchez-Fernandez, E Rumetshofer… - Nature …, 2023 - nature.com
The field of bioimage analysis is currently impacted by a profound transformation, driven by
the advancements in imaging technologies and artificial intelligence. The emergence of …

High-dimensional Bayesian optimisation with variational autoencoders and deep metric learning

A Grosnit, R Tutunov, AM Maraval, RR Griffiths… - arXiv preprint arXiv …, 2021 - arxiv.org
We introduce a method combining variational autoencoders (VAEs) and deep metric
learning to perform Bayesian optimisation (BO) over high-dimensional and structured input …

Context-enriched molecule representations improve few-shot drug discovery

J Schimunek, P Seidl, L Friedrich, D Kuhn… - arXiv preprint arXiv …, 2023 - arxiv.org
A central task in computational drug discovery is to construct models from known active
molecules to find further promising molecules for subsequent screening. However, typically …

FPT: fine-grained detection of driver distraction based on the feature pyramid vision transformer

H Wang, J Chen, Z Huang, B Li, J Lv… - IEEE transactions on …, 2022 - ieeexplore.ieee.org
According to the surveys of the World Health Organization, distracted driving is one of main
causes of road traffic accidents. To improve road traffic safety, real-time detection of drivers' …

Design of organic electronic materials with a goal-directed generative model powered by deep neural networks and high-throughput molecular simulations

HS Kwak, Y An, DJ Giesen, TF Hughes… - Frontiers in …, 2022 - frontiersin.org
In recent years, generative machine learning approaches have attracted significant attention
as an enabling approach for designing novel molecular materials with minimal design bias …