Regulation of adult stem cell quiescence and its functions in the maintenance of tissue integrity

A de Morree, TA Rando - Nature Reviews Molecular Cell Biology, 2023 - nature.com
Adult stem cells are important for mammalian tissues, where they act as a cell reserve that
supports normal tissue turnover and can mount a regenerative response following acute …

From haematopoietic stem cells to complex differentiation landscapes

E Laurenti, B Göttgens - Nature, 2018 - nature.com
The development of mature blood cells from haematopoietic stem cells has long served as a
model for stem-cell research, with the haematopoietic differentiation tree being widely used …

Integrated single-cell analysis maps the continuous regulatory landscape of human hematopoietic differentiation

JD Buenrostro, MR Corces, CA Lareau, B Wu… - Cell, 2018 - cell.com
Human hematopoiesis involves cellular differentiation of multipotent cells into progressively
more lineage-restricted states. While the chromatin accessibility landscape of this process …

Lineage-specific genome architecture links enhancers and non-coding disease variants to target gene promoters

BM Javierre, OS Burren, SP Wilder, R Kreuzhuber… - Cell, 2016 - cell.com
Long-range interactions between regulatory elements and gene promoters play key roles in
transcriptional regulation. The vast majority of interactions are uncharted, constituting a …

PacBio sequencing and its applications

A Rhoads, KF Au - Genomics, Proteomics and Bioinformatics, 2015 - academic.oup.com
Single-molecule, real-time sequencing developed by Pacific BioSciences offers longer read
lengths than the second-generation sequencing (SGS) technologies, making it well-suited …

Genetic drivers of epigenetic and transcriptional variation in human immune cells

L Chen, B Ge, FP Casale, L Vasquez, T Kwan… - Cell, 2016 - cell.com
Characterizing the multifaceted contribution of genetic and epigenetic factors to disease
phenotypes is a major challenge in human genetics and medicine. We carried out high …

[HTML][HTML] RNA-Seq of tumor-educated platelets enables blood-based pan-cancer, multiclass, and molecular pathway cancer diagnostics

MG Best, N Sol, I Kooi, J Tannous, BA Westerman… - Cancer cell, 2015 - cell.com
Tumor-educated blood platelets (TEPs) are implicated as central players in the systemic and
local responses to tumor growth, thereby altering their RNA profile. We determined the …

Lineage-specific and single-cell chromatin accessibility charts human hematopoiesis and leukemia evolution

MR Corces, JD Buenrostro, B Wu, PG Greenside… - Nature …, 2016 - nature.com
We define the chromatin accessibility and transcriptional landscapes in 13 human primary
blood cell types that span the hematopoietic hierarchy. Exploiting the finding that the …

EMT and stemness: flexible processes tuned by alternative splicing in development and cancer progression

D Pradella, C Naro, C Sette, C Ghigna - Molecular cancer, 2017 - Springer
Epithelial-to-mesenchymal transition (EMT) is associated with metastasis formation as well
as with generation and maintenance of cancer stem cells. In this way, EMT contributes to …

[HTML][HTML] The Human Cell Atlas bone marrow single-cell interactive web portal

SB Hay, K Ferchen, K Chetal, HL Grimes… - Experimental …, 2018 - Elsevier
Highlights•Interactive resource for bone marrow donor variation between cell
populations.•Deep evaluation of Human Cell Atlas (HCA) data spanning eight donors and …