Optical tweezers in single-molecule biophysics
CJ Bustamante, YR Chemla, S Liu… - Nature Reviews Methods …, 2021 - nature.com
Optical tweezers have become the method of choice in single-molecule manipulation
studies. In this Primer, we first review the physical principles of optical tweezers and the …
studies. In this Primer, we first review the physical principles of optical tweezers and the …
DNA supercoiling during transcription
J Ma, MD Wang - Biophysical reviews, 2016 - Springer
The twin-supercoiled-domain model describes how transcription can drive DNA
supercoiling, and how DNA supercoiling, in turn, plays an important role in regulating gene …
supercoiling, and how DNA supercoiling, in turn, plays an important role in regulating gene …
Magnetic torque tweezers: measuring torsional stiffness in DNA and RecA-DNA filaments
J Lipfert, JWJ Kerssemakers, T Jager, NH Dekker - Nature methods, 2010 - nature.com
We introduce magnetic torque tweezers, which enable direct single-molecule
measurements of torque. Our measurements of the effective torsional stiffness C of dsDNA …
measurements of torque. Our measurements of the effective torsional stiffness C of dsDNA …
Quantifying how DNA stretches, melts and changes twist under tension
In cells, DNA is constantly twisted, bent and stretched by numerous proteins mediating
genome transactions. Understanding these essential biological processes requires in-depth …
genome transactions. Understanding these essential biological processes requires in-depth …
Double-stranded RNA under force and torque: similarities to and striking differences from double-stranded DNA
RNA plays myriad roles in the transmission and regulation of genetic information that are
fundamentally constrained by its mechanical properties, including the elasticity and …
fundamentally constrained by its mechanical properties, including the elasticity and …
Chromatinization modulates topoisomerase II processivity
Type IIA topoisomerases are essential DNA processing enzymes that must robustly and
reliably relax DNA torsional stress. While cellular processes constantly create varying …
reliably relax DNA torsional stress. While cellular processes constantly create varying …
Torsional stiffness of extended and plectonemic DNA
DNA torsional elastic properties play a crucial role in DNA structure, topology, and the
regulation of motor protein progression. However, direct measurements of these parameters …
regulation of motor protein progression. However, direct measurements of these parameters …
Probing the mechanical properties, conformational changes, and interactions of nucleic acids with magnetic tweezers
Nucleic acids are central to the storage and transmission of genetic information. Mechanical
properties, along with their sequence, both enable and fundamentally constrain the …
properties, along with their sequence, both enable and fundamentally constrain the …
Understanding the mechanical response of double-stranded DNA and RNA under constant stretching forces using all-atom molecular dynamics
A Marin-Gonzalez, JG Vilhena… - Proceedings of the …, 2017 - National Acad Sciences
Multiple biological processes involve the stretching of nucleic acids (NAs). Stretching forces
induce local changes in the molecule structure, inhibiting or promoting the binding of …
induce local changes in the molecule structure, inhibiting or promoting the binding of …
Underwound DNA under tension: structure, elasticity, and sequence-dependent behaviors
DNA melting under torsion plays an important role in a wide variety of cellular processes. In
the present Letter, we have investigated DNA melting at the single-molecule level using an …
the present Letter, we have investigated DNA melting at the single-molecule level using an …