MiFish metabarcoding: a high-throughput approach for simultaneous detection of multiple fish species from environmental DNA and other samples
We reviewed the current methodology and practices of the DNA metabarcoding approach
using a universal PCR primer pair MiFish, which co-amplifies a short fragment of fish DNA …
using a universal PCR primer pair MiFish, which co-amplifies a short fragment of fish DNA …
Systematic review of cnidarian microbiomes reveals insights into the structure, specificity, and fidelity of marine associations
M McCauley, TL Goulet, CR Jackson… - Nature …, 2023 - nature.com
Microorganisms play essential roles in the health and resilience of cnidarians.
Understanding the factors influencing cnidarian microbiomes requires cross study …
Understanding the factors influencing cnidarian microbiomes requires cross study …
Anacapa Toolkit: An environmental DNA toolkit for processing multilocus metabarcode datasets
Environmental DNA (eDNA) metabarcoding is a promising method to monitor species and
community diversity that is rapid, affordable and non‐invasive. The longstanding needs of …
community diversity that is rapid, affordable and non‐invasive. The longstanding needs of …
Revisiting the effect of PCR replication and sequencing depth on biodiversity metrics in environmental DNA metabarcoding
Environmental DNA (eDNA) metabarcoding is an increasingly popular tool for measuring
and cataloguing biodiversity. Because the environments and substrates in which DNA is …
and cataloguing biodiversity. Because the environments and substrates in which DNA is …
Organic vs. conventional: impact of cultivation treatments on the soil microbiota in the vineyard
A Colautti, M Civilini, M Contin, E Celotti… - Frontiers in …, 2023 - frontiersin.org
The aim of this study was to compare the effects of two vineyard management practices on
the soil and its associated microbiota. The experiments were conducted in two adjacent …
the soil and its associated microbiota. The experiments were conducted in two adjacent …
Short-lived detection of an introduced vertebrate eDNA signal in a nearshore rocky reef environment
Environmental DNA (eDNA) is increasingly used to measure biodiversity of marine
ecosystems, yet key aspects of the temporal dynamics of eDNA remain unknown. Of …
ecosystems, yet key aspects of the temporal dynamics of eDNA remain unknown. Of …
Comparing sediment DNA extraction methods for assessing organic enrichment associated with marine aquaculture
Marine sediments contain a high diversity of micro-and macro-organisms which are
important in the functioning of biogeochemical cycles. Traditionally, anthropogenic …
important in the functioning of biogeochemical cycles. Traditionally, anthropogenic …
Accumulation of Black Carbon Particles in Placenta, Cord Blood, and Childhood Urine in Association with the Intestinal Microbiome Diversity and Composition in Four …
T Van Pee, J Hogervorst, Y Dockx… - Environmental …, 2023 - ehp.niehs.nih.gov
Background: The gut microbiome plays an essential role in human health. Despite the link
between air pollution exposure and various diseases, its association with the gut …
between air pollution exposure and various diseases, its association with the gut …
Landscape analyses using eDNA metabarcoding and Earth observation predict community biodiversity in California
Ecosystems globally are under threat from ongoing anthropogenic environmental change.
Effective conservation management requires more thorough biodiversity surveys that can …
Effective conservation management requires more thorough biodiversity surveys that can …
Structure and ecological function of the soil microbiome affecting plant–soil feedbacks in the presence of a soil‐borne pathogen
Interactions between plants and soil microbes are important for plant growth and resistance.
Through plant–soil‐feedbacks, growth of a plant is influenced by the previous plant that was …
Through plant–soil‐feedbacks, growth of a plant is influenced by the previous plant that was …