Recent progress in non-native nucleic acid modifications

LK McKenzie, R El-Khoury, JD Thorpe… - Chemical Society …, 2021 - pubs.rsc.org
While Nature harnesses RNA and DNA to store, read and write genetic information, the
inherent programmability, synthetic accessibility and wide functionality of these nucleic acids …

i-Motif DNA: structural features and significance to cell biology

H Abou Assi, M Garavís, C González… - Nucleic acids …, 2018 - academic.oup.com
The i-motif represents a paradigmatic example of the wide structural versatility of nucleic
acids. In remarkable contrast to duplex DNA, i-motifs are four-stranded DNA structures held …

2′-Fluoro-arabinonucleic acid (FANA): a versatile tool for probing biomolecular interactions

R El-Khoury, MJ Damha - Accounts of Chemical Research, 2021 - ACS Publications
Conspectus This Account highlights the structural features that render 2′-deoxy-2′-fluoro-
arabinonucleic acid (FANA) an ideal tool for mimicking DNA secondary structures and …

Chemical regulation of DNA i‐motifs for nanobiotechnology and therapeutics

M Debnath, K Fatma, J Dash - Angewandte Chemie, 2019 - Wiley Online Library
DNA sequences rich in cytosine have the propensity, under acidic pH, to fold into four‐
stranded intercalated DNA structures called i‐motifs. Recent studies have provided …

The roles of DNA methylation on pH dependent i-motif (iM) formation in rice

Y Feng, X Ma, Y Yang, S Tao, A Ahmed… - Nucleic Acids …, 2024 - academic.oup.com
I-motifs (iMs) are four-stranded non-B DNA structures containing C-rich DNA sequences.
The formation of iMs is sensitive to pH conditions and DNA methylation, although the extent …

Epigenetic modification of cytosines fine tunes the stability of i-motif DNA

EP Wright, MAS Abdelhamid, MO Ehiabor… - Nucleic Acids …, 2020 - academic.oup.com
Abstract i-Motifs are widely used in nanotechnology, play a part in gene regulation and have
been detected in human nuclei. As these structures are composed of cytosine, they are …

i-Motif folding intermediates with zero-nucleotide loops are trapped by 2′-fluoroarabinocytidine via F··· H and O··· H hydrogen bonds

R El-Khoury, V Macaluso, C Hennecker… - Communications …, 2023 - nature.com
G-quadruplex and i-motif nucleic acid structures are believed to fold through kinetic
partitioning mechanisms. Such mechanisms explain the structural heterogeneity of G …

End-ligation can dramatically stabilize i-motifs at neutral pH

R El-Khoury, MJ Damha - Chemical Communications, 2023 - pubs.rsc.org
Stabilizing i-motif structures at neutral pH and physiological temperature remains a major
challenge. Here, we demonstrate the use of chemical end-ligation to stabilize intramolecular …

i-Motif DNA: identification, formation, and cellular functions

S Tao, Y Run, D Monchaud, W Zhang - Trends in Genetics, 2024 - Elsevier
An i-motif (iM) is a four-stranded (quadruplex) DNA structure that folds from cytosine (C)-rich
sequences. iMs can fold under many different conditions in vitro, which paves the way for …

Influence of 5-methylation and the 2′-and 3′-hydroxy substituents on the base pairing energies of protonated cytidine nucleoside analogue base pairs: implications …

YS Seidu, HA Roy, MT Rodgers - The Journal of Physical …, 2021 - ACS Publications
Repetitive nucleic acid sequences, which occur in abundance throughout the mammalian
genome, are of enormous research interest due to their potential to adopt fascinating and …