The ubiquitous hammerhead ribozyme

C Hammann, A Luptak, J Perreault, M De La Peña - Rna, 2012 - rnajournal.cshlp.org
The hammerhead ribozyme is a small catalytic RNA motif capable of endonucleolytic (self-)
cleavage. It is composed of a catalytic core of conserved nucleotides flanked by three …

Viroids: Non-coding circular RNAs able to autonomously replicate and infect higher plants

B Ortolá, JA Daròs - Biology, 2023 - mdpi.com
Simple Summary Viroids are the smallest infectious agents currently known. Despite
consisting of a relatively small RNA molecule that does not code for any protein, viroids …

Identification of hammerhead ribozymes in all domains of life reveals novel structural variations

J Perreault, Z Weinberg, A Roth… - PLoS computational …, 2011 - journals.plos.org
Hammerhead ribozymes are small self-cleaving RNAs that promote strand scission by
internal phosphoester transfer. Comparative sequence analysis was used to identify …

Capturing hammerhead ribozyme structures in action by modulating general base catalysis

YI Chi, M Martick, M Lares, R Kim, WG Scott… - PLoS biology, 2008 - journals.plos.org
We have obtained precatalytic (enzyme–substrate complex) and postcatalytic (enzyme–
product complex) crystal structures of an active full-length hammerhead RNA that cleaves in …

Controlled Chaos of Polymorphic Mucins in a Metazoan Parasite (Schistosoma mansoni) Interacting with Its Invertebrate Host (Biomphalaria glabrata)

E Roger, C Grunau, RJ Pierce, H Hirai… - PLoS neglected …, 2008 - journals.plos.org
Invertebrates were long thought to possess only a simple, effective and hence non-adaptive
defence system against microbial and parasitic attacks. However, recent studies have …

Discovery of natural non-circular permutations in non-coding RNAs

I Eckert, R Friedrich, CE Weinberg… - Nucleic acids …, 2023 - academic.oup.com
Research in the last two decades has increasingly demonstrated that RNA has capabilities
comparable to those of proteins, for example the ability to form intricate 3D structures …

Viroid-specific small RNA in plant disease

C Hammann, G Steger - RNA biology, 2012 - Taylor & Francis
Viroids are the smallest autonomous infectious nucleic acids known today. They are non-
coding, unencapsidated, circular RNAs with sizes ranging from 250 to 400 nucleotides and …

Deep-sequencing of the peach latent mosaic viroid reveals new aspects of population heterogeneity

JPS Glouzon, F Bolduc, S Wang, RJ Najmanovich… - PLoS …, 2014 - journals.plos.org
Viroids are small circular single-stranded infectious RNAs characterized by a relatively high
mutation level. Knowledge of their sequence heterogeneity remains largely elusive and …

Catalytic diversity of extended hammerhead ribozymes

IV Shepotinovskaya, OC Uhlenbeck - Biochemistry, 2008 - ACS Publications
Chimeras of the well-characterized minimal hammerhead 16 and nine extended
hammerheads derived from natural viroids and satellite RNAs were constructed with the …

Structure–function relationships in RNA and RNP enzymes: recent advances

CG Hoogstraten, M Sumita - Biopolymers: Original Research on …, 2007 - Wiley Online Library
The structural biology of ribozymes and ribonucleoprotein (RNP) enzymes is now sufficiently
advanced that a true dialogue between structural and functional studies is possible. In this …