Recommendations for the design and analysis of epigenome-wide association studies

KB Michels, AM Binder, S Dedeurwaerder… - Nature …, 2013 - nature.com
Epigenome-wide association studies (EWAS) hold promise for the detection of new
regulatory mechanisms that may be susceptible to modification by environmental and …

Concise review: harmonies played by microRNAs in cell fate reprogramming

S Moradi, S Asgari, H Baharvand - Stem Cells, 2014 - academic.oup.com
It is now well-established that somatic cells can be reprogrammed to alternative cell fates by
ectopic coexpression of defined factors. Reprogramming technology has uncovered a huge …

Genome-wide analysis reveals distinct patterns of epigenetic features in long non-coding RNA loci

S Sati, S Ghosh, V Jain, V Scaria… - Nucleic acids …, 2012 - academic.oup.com
A major fraction of the transcriptome of higher organisms comprised an extensive repertoire
of long non-coding RNA (lncRNA) which express in a cell type and development stage …

Adult porcine genome-wide DNA methylation patterns support pigs as a biomedical model

KM Schachtschneider, O Madsen, C Park, LA Rund… - BMC genomics, 2015 - Springer
Abstract Background Pigs (Sus scrofa) provide relevant biomedical models to dissect
complex diseases due to their anatomical, genetic, and physiological similarities with …

Angelman syndrome-derived neurons display late onset of paternal UBE3A silencing

J Stanurova, A Neureiter, M Hiber… - Scientific Reports, 2016 - nature.com
Genomic imprinting is an epigenetic phenomenon resulting in parent-of-origin-specific gene
expression that is regulated by a differentially methylated region. Gene mutations or failures …

Promoter methylation in head and neck squamous cell carcinoma cell lines is significantly different than methylation in primary tumors and xenografts

PT Hennessey, MF Ochs, WW Mydlarz, W Hsueh… - PloS one, 2011 - journals.plos.org
Studies designed to identify novel methylation events related to cancer often employ cancer
cell lines in the discovery phase of the experiments and have a relatively low rate of …

Interaction between genetic and epigenetic variation defines gene expression patterns at the asthma-associated locus 17q12-q21 in lymphoblastoid cell lines

S Berlivet, S Moussette, M Ouimet, DJ Verlaan, V Koka… - Human genetics, 2012 - Springer
Phenotypic variation results from variation in gene expression, which is modulated by
genetic and/or epigenetic factors. To understand the molecular basis of human disease …

The influence of FKBP5 genotype on expression of FKBP5 and other glucocorticoid‐regulated genes, dependent on trauma exposure

S Yeo, MA Enoch, E Gorodetsky… - Genes, Brain and …, 2017 - Wiley Online Library
The FK506 binding protein 51 (FKBP5), an intrinsic regulator of the glucocorticoid receptor,
has been associated with pathological behaviors particularly in the context of childhood …

Stability of gene expression and epigenetic profiles highlights the utility of patient-derived paediatric acute lymphoblastic leukaemia xenografts for investigating …

NC Wong, VA Bhadri, J Maksimovic… - BMC genomics, 2014 - Springer
Background Patient-derived tumour xenografts are an attractive model for preclinical testing
of anti-cancer drugs. Insights into tumour biology and biomarkers predictive of responses to …

Local genotype influences DNA methylation at two asthma-associated regions, 5q31 and 17q21, in a founder effect population

A Al Tuwaijri, V Gagné-Ouellet, AM Madore… - Journal of medical …, 2016 - jmg.bmj.com
Background Two asthma-associated regions 17q12–q21 and 5q31. 1 harbour genes that
show strong effect of genotype on expression levels. DNA methylation has an important role …