Physical chemistry of polyglutamine: intriguing tales of a monotonous sequence

R Wetzel - Journal of molecular biology, 2012 - Elsevier
Polyglutamine (polyQ) sequences of unknown normal function are present in a significant
number of proteins, and their repeat expansion is associated with a number of genetic …

The OPEP protein model: from single molecules, amyloid formation, crowding and hydrodynamics to DNA/RNA systems

F Sterpone, S Melchionna, P Tuffery… - Chemical Society …, 2014 - pubs.rsc.org
The OPEP coarse-grained protein model has been applied to a wide range of applications
since its first release 15 years ago. The model, which combines energetic and structural …

Advances in the understanding of protein misfolding and aggregation through molecular dynamics simulation

A Rahman, B Saikia, CR Gogoi, A Baruah - Progress in Biophysics and …, 2022 - Elsevier
Aberrant protein folding known as protein misfolding is counted as one of the striking factors
of neurodegenerative diseases. The extensive range of pathologies caused by protein …

Distinct Dimerization for Various Alloforms of the Amyloid-Beta Protein: Aβ1–40, Aβ1–42, and Aβ1–40(D23N)

S Côté, R Laghaei, P Derreumaux… - The journal of physical …, 2012 - ACS Publications
The Amyloid-beta protein is related to Alzheimer's disease, and various experiments have
shown that oligomers as small as the dimer are cytotoxic. Two alloforms are mainly …

Polyglutamine amyloid core boundaries and flanking domain dynamics in huntingtin fragment fibrils determined by solid-state nuclear magnetic resonance

CL Hoop, HK Lin, K Kar, Z Hou, MA Poirier… - Biochemistry, 2014 - ACS Publications
In Huntington's disease, expansion of a polyglutamine (polyQ) domain in the huntingtin (htt)
protein leads to misfolding and aggregation. There is much interest in the molecular features …

Distinct Morphologies for Amyloid Beta Protein Monomer: Aβ1–40, Aβ1–42, and Aβ1–40(D23N)

S Côté, P Derreumaux, N Mousseau - Journal of chemical theory …, 2011 - ACS Publications
Numerous experimental studies indicate that amyloid beta protein (Aβ) oligomers as small
as dimers trigger Alzheimer's disease. Precise solution conformation of Aβ monomer is …

Structure and thermodynamics of amylin dimer studied by Hamiltonian-temperature replica exchange molecular dynamics simulations

R Laghaei, N Mousseau, G Wei - The Journal of Physical …, 2011 - ACS Publications
The loss of the insulin-producing β-cells in the pancreatic islets of Langerhans, responsible
for type-II diabetes, is associated with islet amyloid deposits. The main component of these …

Transformation between α‐helix and β‐sheet structures of one and two polyglutamine peptides in explicit water molecules by replica‐exchange molecular dynamics …

HL Chiang, CJ Chen, H Okumura… - Journal of computational …, 2014 - Wiley Online Library
Aggregation of polyglutamine peptides with β‐sheet structures is related to some important
neurodegenerative diseases such as Huntington's disease. However, it is not clear how …

Distinct binding interactions trigger opposite conformational modulations on pathogenic and wildtype Huntingtin exon 1 proteins

J Guan, Z Song, G Wei, Q Qiao - Physical Chemistry Chemical Physics, 2022 - pubs.rsc.org
Abnormal elongation of the polyglutamine tract transforms exon 1 of the Huntingtin protein
(Htt-exon-1) from wildtype to pathogenic form, and causes Huntington's disease. As an …

Secondary structures of native and pathogenic huntingtin N-terminal fragments

M Długosz, J Trylska - The journal of physical chemistry B, 2011 - ACS Publications
Huntington's disease is a neurodegenerative disorder caused by a polyglutamine (polyQ)
expansion in the N-terminal fragment of the Huntingtin (Htt) protein. Structural properties of …