DNA G-quadruplex structures: more than simple roadblocks to transcription?
It has been> 20 years since the formation of G-quadruplex (G4) secondary structures in
gene promoters was first linked to the regulation of gene expression. Since then, the …
gene promoters was first linked to the regulation of gene expression. Since then, the …
Intertwining roles of R-loops and G-quadruplexes in DNA repair, transcription and genome organization
P Wulfridge, K Sarma - Nature Cell Biology, 2024 - nature.com
R-loops are three-stranded nucleic acid structures that are abundant and widespread across
the genome and that have important physiological roles in many nuclear processes. Their …
the genome and that have important physiological roles in many nuclear processes. Their …
Genome-wide mapping of i-motifs reveals their association with transcription regulation in live human cells
I Zanin, E Ruggiero, G Nicoletto, S Lago… - Nucleic Acids …, 2023 - academic.oup.com
Abstract i-Motifs (iMs) are four-stranded DNA structures that form at cytosine (C)-rich
sequences in acidic conditions in vitro. Their formation in cells is still under debate. We …
sequences in acidic conditions in vitro. Their formation in cells is still under debate. We …
G-quadruplexes are transcription factor binding hubs in human chromatin
Background The binding of transcription factors (TF) to genomic targets is critical in the
regulation of gene expression. Short, double-stranded DNA sequence motifs are routinely …
regulation of gene expression. Short, double-stranded DNA sequence motifs are routinely …
[HTML][HTML] Noncanonical DNA structures are drivers of genome evolution
KD Makova, MH Weissensteiner - Trends in Genetics, 2023 - cell.com
In addition to the canonical right-handed double helix, other DNA structures, termed 'non-B
DNA', can form in the genomes across the tree of life. Non-B DNA regulates multiple cellular …
DNA', can form in the genomes across the tree of life. Non-B DNA regulates multiple cellular …
Genome-wide mapping of G-quadruplex structures with CUT&Tag
J Lyu, R Shao, PY Kwong Yung… - Nucleic acids …, 2022 - academic.oup.com
Single-stranded genomic DNA can fold into G-quadruplex (G4) structures or form DNA: RNA
hybrids (R loops). Recent evidence suggests that such non-canonical DNA structures affect …
hybrids (R loops). Recent evidence suggests that such non-canonical DNA structures affect …
Ligand-induced native G-quadruplex stabilization impairs transcription initiation
C Li, H Wang, Z Yin, P Fang, R Xiao, Y Xiang… - Genome …, 2021 - genome.cshlp.org
G-quadruplexes (G4s) are noncanonical DNA secondary structures formed through the self-
association of guanines, and G4s are distributed widely across the genome. G4 participates …
association of guanines, and G4s are distributed widely across the genome. G4 participates …
[HTML][HTML] Detection of alternative DNA structures and its implications for human disease
G Matos-Rodrigues, JA Hisey, A Nussenzweig… - Molecular Cell, 2023 - cell.com
Around 3% of the genome consists of simple DNA repeats that are prone to forming
alternative (non-B) DNA structures, such as hairpins, cruciforms, triplexes (H-DNA), four …
alternative (non-B) DNA structures, such as hairpins, cruciforms, triplexes (H-DNA), four …
G-quadruplex-binding proteins: promising targets for drug design
H Shu, R Zhang, K Xiao, J Yang, X Sun - Biomolecules, 2022 - mdpi.com
G-quadruplexes (G4s) are non-canonical secondary nucleic acid structures. Sequences with
the potential to form G4s are abundant in regulatory regions of the genome including …
the potential to form G4s are abundant in regulatory regions of the genome including …
G-quadruplex DNA contributes to RNA polymerase II-mediated 3D chromatin architecture
High-order chromatin organization plays an important role in biological processes and
disease development. Previous studies revealed a widespread occurrence of guanine …
disease development. Previous studies revealed a widespread occurrence of guanine …