[HTML][HTML] Functional genomics and small molecules in mitochondrial neurodevelopmental disorders

DG Calame, LT Emrick - Neurotherapeutics, 2024 - Elsevier
Mitochondria are critical for brain development and homeostasis. Therefore, pathogenic
variation in the mitochondrial or nuclear genome which disrupts mitochondrial function …

Lethal phenotypes in Mendelian disorders

P Cacheiro, S Lawson, IB Van den Veyver… - Genetics in …, 2024 - Elsevier
Purpose Existing resources that characterize the essentiality status of genes are based on
either proliferation assessment in human cell lines, viability evaluation in mouse knockouts …

[HTML][HTML] Deep generative modeling of the human proteome reveals over a hundred novel genes involved in rare genetic disorders

R Orenbuch, AW Kollasch, HD Spinner, CA Shearer… - Medrxiv, 2023 - ncbi.nlm.nih.gov
Identifying causal mutations accelerates genetic disease diagnosis, and therapeutic
development. Missense variants present a bottleneck in genetic diagnoses as their effects …

Causal Discovery under Latent Class Confounding

B Mazaheri, S Gordon, Y Rabani… - arXiv preprint arXiv …, 2023 - arxiv.org
Directed acyclic graphs are used to model the causal structure of a system.``Causal
discovery''describes the problem of learning this structure from data. When data is an …

[HTML][HTML] The Scalable Variant Call Representation: Enabling Genetic Analysis Beyond One Million Genomes

T Poterba, C Vittal, D King, D Goldstein, JI Goldstein… - bioRxiv, 2024 - ncbi.nlm.nih.gov
Abstract The Variant Call Format (VCF) is widely used in genome sequencing but scales
poorly. For instance, we estimate a 150,000 genome VCF would occupy 900 TiB, making it …

[HTML][HTML] Genetic Analysis and Functional Assessment of a TGFBR2 Variant in Micrognathia and Cleft Palate

JESR Michaels, A Husami, AM Vontell, SA Brugmann… - bioRxiv, 2024 - ncbi.nlm.nih.gov
Cleft lip and cleft palate are among the most common congenital anomalies and are the
result of incomplete fusion of embryonic craniofacial processes or palatal shelves …