Integration of the Drug–Gene Interaction Database (DGIdb 4.0) with open crowdsource efforts

SL Freshour, S Kiwala, KC Cotto… - Nucleic acids …, 2021 - academic.oup.com
Abstract The Drug-Gene Interaction Database (DGIdb, www. dgidb. org) is a web resource
that provides information on drug-gene interactions and druggable genes from publications …

[HTML][HTML] Genetic evidence of gender difference in autism spectrum disorder supports the female-protective effect

Y Zhang, N Li, C Li, Z Zhang, H Teng, Y Wang… - Translational …, 2020 - nature.com
Autism spectrum disorder (ASD) is a complex neurodevelopmental disorder with a male-to-
female prevalence of 4: 1. However, the genetic mechanisms underlying this gender …

Systematic discovery of protein interaction interfaces using AlphaFold and experimental validation

CY Lee, D Hubrich, JK Varga, C Schäfer… - Molecular Systems …, 2024 - embopress.org
Structural resolution of protein interactions enables mechanistic and functional studies as
well as interpretation of disease variants. However, structural data is still missing for most …

[HTML][HTML] Solving patients with rare diseases through programmatic reanalysis of genome-phenome data

L Matalonga, C Hernández-Ferrer, D Piscia… - European Journal of …, 2021 - nature.com
Reanalysis of inconclusive exome/genome sequencing data increases the diagnosis yield
of patients with rare diseases. However, the cost and efforts required for reanalysis prevent …

[HTML][HTML] An updated catalog of CTCF variants associated with neurodevelopmental disorder phenotypes

E Price, LM Fedida, EM Pugacheva, YJ Ji… - Frontiers in Molecular …, 2023 - frontiersin.org
Introduction CTCF-related disorder (CRD) is a neurodevelopmental disorder (NDD) caused
by monoallelic pathogenic variants in CTCF. The first CTCF variants in CRD cases were …

Histones: coming of age in Mendelian genetic disorders

K Knapp, N Naik, S Ray, G van Haaften… - Journal of Medical …, 2023 - jmg.bmj.com
Histones hold significant interest in development and genetic disorders due to their critical
roles in chromatin dynamics, influencing gene expression and genome integrity. These roles …

[HTML][HTML] Putative complement control protein CSMD3 dysfunction impairs synaptogenesis and induces neurodevelopmental disorders

W Song, Q Li, T Wang, Y Li, T Fan, J Zhang… - Brain, Behavior, and …, 2022 - Elsevier
Recent studies have reported that complement-related proteins modulate brain
development through regulating synapse processes in the cortex. CSMD3 belongs to a …

VarCards2: an integrated genetic and clinical database for ACMG-AMP variant-interpretation guidelines in the human whole genome

Z Wang, G Zhao, Z Zhu, Y Wang, X Xiang… - Nucleic Acids …, 2024 - academic.oup.com
VarCards, an online database, combines comprehensive variant-and gene-level annotation
data to streamline genetic counselling for coding variants. Recognising the increasing …

Performance evaluation of differential splicing analysis methods and splicing analytics platform construction

K Li, T Luo, Y Zhu, Y Huang, A Wang… - Nucleic Acids …, 2022 - academic.oup.com
A proportion of previously defined benign variants or variants of uncertain significance in
humans, which are challenging to identify, may induce an abnormal splicing process. An …

CircleBase: an integrated resource and analysis platform for human eccDNAs

X Zhao, L Shi, S Ruan, W Bi, Y Chen… - Nucleic acids …, 2022 - academic.oup.com
Rapid advances in high-throughput sequencing technologies have led to the discovery of
thousands of extrachromosomal circular DNAs (eccDNAs) in the human genome. Loss-of …