cis-Antisense RNA, Another Level of Gene Regulation in Bacteria

J Georg, WR Hess - Microbiology and Molecular Biology Reviews, 2011 - Am Soc Microbiol
SUMMARY A substantial amount of antisense transcription is a hallmark of gene expression
in eukaryotes. However, antisense transcription was first demonstrated in bacteria almost 50 …

Transcriptional interference–a crash course

KE Shearwin, BP Callen, JB Egan - TRENDS in Genetics, 2005 - cell.com
The term 'transcriptional interference'(TI) is widely used but poorly defined in the literature.
There are a variety of methods by which one can interfere with the process or the product of …

Antibiotic-resistant bacteria show widespread collateral sensitivity to antimicrobial peptides

V Lázár, A Martins, R Spohn, L Daruka, G Grézal… - Nature …, 2018 - nature.com
Antimicrobial peptides are promising alternative antimicrobial agents. However, little is
known about whether resistance to small-molecule antibiotics leads to cross-resistance …

An atlas of Hfq‐bound transcripts reveals 3′ UTRs as a genomic reservoir of regulatory small RNAs

Y Chao, K Papenfort, R Reinhardt, CM Sharma… - The EMBO …, 2012 - embopress.org
The small RNAs associated with the protein Hfq constitute one of the largest classes of post‐
transcriptional regulators known to date. Most previously investigated members of this class …

Global identification of human transcribed sequences with genome tiling arrays

P Bertone, V Stolc, TE Royce, JS Rozowsky, AE Urban… - Science, 2004 - science.org
Elucidating the transcribed regions of the genome constitutes a fundamental aspect of
human biology, yet this remains an outstanding problem. To comprehensively identify …

Empirical Analysis of Transcriptional Activity in the Arabidopsis Genome

K Yamada, J Lim, JM Dale, H Chen, P Shinn, CJ Palm… - science, 2003 - science.org
Functional analysis of a genome requires accurate gene structure information and a
complete gene inventory. A dual experimental strategy was used to verify and correct the …

Transcriptome complexity in a genome-reduced bacterium

M Güell, V Van Noort, E Yus, WH Chen, J Leigh-Bell… - Science, 2009 - science.org
To study basic principles of transcriptome organization in bacteria, we analyzed one of the
smallest self-replicating organisms, Mycoplasma pneumoniae. We combined strand-specific …

Global analysis of small RNA and mRNA targets of Hfq

A Zhang, KM Wassarman, C Rosenow… - Molecular …, 2003 - Wiley Online Library
Hfq, a bacterial member of the Sm family of RNA‐binding proteins, is required for the action
of many small regulatory RNAs that act by basepairing with target mRNAs. Hfq binds this …

DCEO biotechnology: tools to design, construct, evaluate, and optimize the metabolic pathway for biosynthesis of chemicals

X Chen, C Gao, L Guo, G Hu, Q Luo, J Liu… - Chemical …, 2018 - ACS Publications
Chemical synthesis is a well established route for producing many chemicals on a large
scale, but some drawbacks still exist in this process, such as unstable intermediates …

The Small RNA Regulators of Escherichia coli: Roles and Mechanisms

S Gottesman - Annu. Rev. Microbiol., 2004 - annualreviews.org
▪ Abstract Small noncoding RNAs have been found in all organisms, primarily as regulators
of translation and message stability. The most exhaustive searches have taken place in E …