In vivo hypermutation and continuous evolution
Directed evolution has revolutionized biomolecular engineering by applying cycles of
mutation, amplification and selection to genes of interest (GOIs). However, classical directed …
mutation, amplification and selection to genes of interest (GOIs). However, classical directed …
Opportunities and challenges for machine learning-assisted enzyme engineering
Enzymes can be engineered at the level of their amino acid sequences to optimize key
properties such as expression, stability, substrate range, and catalytic efficiency─ or even to …
properties such as expression, stability, substrate range, and catalytic efficiency─ or even to …
High-throughput continuous evolution of compact Cas9 variants targeting single-nucleotide-pyrimidine PAMs
TP Huang, ZJ Heins, SM Miller, BG Wong… - Nature …, 2023 - nature.com
Despite the availability of Cas9 variants with varied protospacer-adjacent motif (PAM)
compatibilities, some genomic loci—especially those with pyrimidine-rich PAM sequences …
compatibilities, some genomic loci—especially those with pyrimidine-rich PAM sequences …
Evolution of pyrrolysyl-tRNA synthetase: From methanogenesis to genetic code expansion
Over 20 years ago, the pyrrolysine encoding translation system was discovered in specific
archaea. Our Review provides an overview of how the once obscure pyrrolysyl-tRNA …
archaea. Our Review provides an overview of how the once obscure pyrrolysyl-tRNA …
Continuous directed evolution of a compact CjCas9 variant with broad PAM compatibility
CRISPR–Cas9 genome engineering is a powerful technology for correcting genetic
diseases. However, the targeting range of Cas9 proteins is limited by their requirement for a …
diseases. However, the targeting range of Cas9 proteins is limited by their requirement for a …
Computer-aided engineering of lipases solvent tolerance enhanced their applications in sugar esters synthesis: State of the art
Y Qi, M Chen, T Jin, W Chong, Z Zhang, B Nian… - Trends in Food Science & …, 2024 - Elsevier
Abstract Background Sugar esters (SEs) are non-ionic amphiphilic surfactants that possess
excellent emulsifying properties, and consequently have potential applications in the food …
excellent emulsifying properties, and consequently have potential applications in the food …
Continuous evolution of compact protein degradation tags regulated by selective molecular glues
JAM Mercer, SJ DeCarlo, SS Roy Burman, V Sreekanth… - Science, 2024 - science.org
Conditional protein degradation tags (degrons) are usually> 100 amino acids long or are
triggered by small molecules with substantial off-target effects, thwarting their use as specific …
triggered by small molecules with substantial off-target effects, thwarting their use as specific …
Virus-assisted directed evolution of biomolecules
D Jewel, Q Pham, A Chatterjee - Current Opinion in Chemical Biology, 2023 - Elsevier
Directed evolution is a powerful technique that uses principles of natural evolution to enable
the development of biomolecules with novel functions. However, the slow pace of natural …
the development of biomolecules with novel functions. However, the slow pace of natural …
A high-throughput platform for efficient exploration of functional polypeptide chemical space
Rapid and in-depth exploration of the chemical space of high-molecular-weight synthetic
polypeptides via ring-opening polymerization of N-carboxyanhydride allows the discovery of …
polypeptides via ring-opening polymerization of N-carboxyanhydride allows the discovery of …
Engineering is evolution: a perspective on design processes to engineer biology
SD Castle, M Stock, TE Gorochowski - Nature Communications, 2024 - nature.com
Careful consideration of how we approach design is crucial to all areas of biotechnology.
However, choosing or developing an effective design methodology is not always easy as …
However, choosing or developing an effective design methodology is not always easy as …