Activity-based profiling of proteases

LE Sanman, M Bogyo - Annual review of biochemistry, 2014 - annualreviews.org
Proteolytic enzymes are key signaling molecules in both normal physiological processes
and various diseases. After synthesis, protease activity is tightly controlled. Consequently …

The opening dynamics of the lateral gate regulates the activity of rhomboid proteases

C Bohg, C Öster, B Türkaydin, M Lisurek… - Science …, 2023 - science.org
Rhomboid proteases hydrolyze substrate helices within the lipid bilayer to release soluble
domains from the membrane. Here, we investigate the mechanism of activity regulation for …

Activity-based protein profiling of microbes

NC Sadler, AT Wright - Current opinion in chemical biology, 2015 - Elsevier
Highlights•ABPP enabled proteomics and imaging provides insight into microbial
physiology.•Microbe functions, drug interactions, and pathways are revealed by …

Interrogating membrane protein conformational dynamics within native lipid compositions

E Reading, Z Hall, C Martens… - Angewandte Chemie …, 2017 - Wiley Online Library
The interplay between membrane proteins and the lipids of the membrane is important for
cellular function, however, tools enabling the interrogation of protein dynamics within native …

AIG1 and ADTRP are atypical integral membrane hydrolases that degrade bioactive FAHFAs

WH Parsons, MJ Kolar, SS Kamat, ABC III… - Nature chemical …, 2016 - nature.com
Enzyme classes may contain outlier members that share mechanistic, but not sequence or
structural, relatedness with more common representatives. The functional annotation of such …

[HTML][HTML] Residue-by-residue analysis of cotranslational membrane protein integration in vivo

F Nicolaus, A Metola, D Mermans, A Liljenström, A Krč… - Elife, 2021 - elifesciences.org
We follow the cotranslational biosynthesis of three multispanning Escherichia coli inner
membrane proteins in vivo using high-resolution force profile analysis. The force profiles …

Activity-based probes for rhomboid proteases discovered in a mass spectrometry-based assay

O Vosyka, KR Vinothkumar, EV Wolf… - Proceedings of the …, 2013 - National Acad Sciences
Rhomboid proteases are evolutionary conserved intramembrane serine proteases. Because
of their emerging role in many important biological pathways, rhomboids are potential drug …

Steric trapping reveals a cooperativity network in the intramembrane protease GlpG

R Guo, K Gaffney, Z Yang, M Kim, S Sungsuwan… - Nature chemical …, 2016 - nature.com
Membrane proteins are assembled through balanced interactions among proteins, lipids
and water. Studying their folding while maintaining the native lipid environment is necessary …

Reactions at biomembrane interfaces

AN Bondar, MJ Lemieux - Chemical reviews, 2019 - ACS Publications
Membranes surrounding the biological cell and its internal compartments host proteins that
catalyze chemical reactions essential for the functioning of the cell. Rather than being a …

Discovery of cellular roles of intramembrane proteases

HA Beard, M Barniol-Xicota, J Yang… - ACS Chemical …, 2019 - ACS Publications
Intramembrane proteases (IMPs) are localized within lipid bilayers of membranes—either
the cell membrane or membranes of various organelles. Cleavage of substrates often results …