Strain identification and quantitative analysis in microbial communities
AR Ghazi, PC Münch, D Chen, J Jensen… - Journal of Molecular …, 2022 - Elsevier
Microbiology has long studied the ways in which subtle genetic differences between closely
related microbial strains can have profound impacts on their phenotypes and those of their …
related microbial strains can have profound impacts on their phenotypes and those of their …
Scales of persistence: transmission and the microbiome
Highlights•Microbial transmission shapes microbiomes through social networks and co-
housing.•The colonization and persistence dynamics of microbiome members is …
housing.•The colonization and persistence dynamics of microbiome members is …
Generation of comprehensive ecosystem-specific reference databases with species-level resolution by high-throughput full-length 16S rRNA gene sequencing and …
High-throughput 16S rRNA gene amplicon sequencing is an essential method for studying
the diversity and dynamics of microbial communities. However, this method is presently …
the diversity and dynamics of microbial communities. However, this method is presently …
Comparison of bioinformatics pipelines and operating systems for the analyses of 16S rRNA gene amplicon sequences in human fecal samples
Amplicon high-throughput sequencing of 16S ribosomal RNA (rRNA) gene is currently the
most widely used technique to investigate complex gut microbial communities. Microbial …
most widely used technique to investigate complex gut microbial communities. Microbial …
Systematic evaluation of genome-wide metabolic landscapes in lactic acid bacteria reveals diet-and strain-specific probiotic idiosyncrasies
L Koduru, M Lakshmanan, YQ Lee, PL Ho, PY Lim… - Cell Reports, 2022 - cell.com
Lactic acid bacteria (LAB) are well known to elicit health benefits in humans, but their
functional metabolic landscapes remain unexplored. Here, we analyze differences in …
functional metabolic landscapes remain unexplored. Here, we analyze differences in …
Repeated inoculation of young calves with rumen microbiota does not significantly modulate the rumen prokaryotic microbiota consistently but decreases diarrhea
The complex rumen microbiota exhibits some degree of host specificity. The undeveloped
simple rumen microbiota is hypothetically more amendable. The objective of this study was …
simple rumen microbiota is hypothetically more amendable. The objective of this study was …
Characterisation of anaerobic digester microbiome in various operating conditions using next-generation and third-generation sequencing technologies
Y Lam - 2020 - theses.lib.polyu.edu.hk
Anaerobic digestion is a common wastewater treatment technology that alleviates pressure
on sludge disposal and generates energy via combustion of biogas. Diverse groups of …
on sludge disposal and generates energy via combustion of biogas. Diverse groups of …