Phage display technology: clinical applications and recent innovations

HME Azzazy, WE Highsmith Jr - Clinical biochemistry, 2002 - Elsevier
Phage display is a molecular diversity technology that allows the presentation of large
peptide and protein libraries on the surface of filamentous phage. Phage display libraries …

Peptide-mediated interactions in biological systems: new discoveries and applications

E Petsalaki, RB Russell - Current opinion in biotechnology, 2008 - Elsevier
Peptide-mediated interactions play very important roles in cellular processes. Recent years
have seen much activity in the discovery of new bioactive peptides, and interactions …

PepQSAR: a comprehensive data source and information platform for peptide quantitative structure–activity relationships

J Lin, L Wen, Y Zhou, S Wang, H Ye, J Su, J Li, J Shu… - Amino Acids, 2023 - Springer
Peptide quantitative structure–activity relationships (pQSARs) have been widely applied to
the statistical modeling and empirical prediction of peptide activity, property and feature. In …

PepBank-a database of peptides based on sequence text mining and public peptide data sources

T Shtatland, D Guettler, M Kossodo, M Pivovarov… - BMC …, 2007 - Springer
Background Peptides are important molecules with diverse biological functions and
biomedical uses. To date, there does not exist a single, searchable archive for peptide …

Bioinformatics resources and tools for conformational B‐cell epitope prediction

P Sun, H Ju, Z Liu, Q Ning, J Zhang… - … methods in medicine, 2013 - Wiley Online Library
Identification of epitopes which invoke strong humoral responses is an essential issue in the
field of immunology. Localizing epitopes by experimental methods is expensive in terms of …

Optimising enzyme function by directed evolution

PA Dalby - Current opinion in structural biology, 2003 - Elsevier
The past decade has seen a revolution in our ability to engineer designer enzymes using
genetic tools that mimic evolution on a laboratory timescale. Many excellent examples of …

MimoDB 2.0: a mimotope database and beyond

J Huang, B Ru, P Zhu, F Nie, J Yang… - Nucleic acids …, 2012 - academic.oup.com
Mimotopes are peptides with affinities to given targets. They are readily obtained through
biopanning against combinatorial peptide libraries constructed by phage display and other …

BDB: biopanning data bank

B He, G Chai, Y Duan, Z Yan, L Qiu… - Nucleic acids …, 2016 - academic.oup.com
Abstract The BDB database (http://immunet. cn/bdb) is an update of the MimoDB database,
which was previously described in the 2012 Nucleic Acids Research Database issue. The …

The Database of Quantitative Cellular Signaling: management and analysis of chemical kinetic models of signaling networks

S Sivakumaran, S Hariharaputran, J Mishra… - …, 2003 - academic.oup.com
Motivation: Analysis of cellular signaling interactions is expected to pose an enormous
informatics challenge, perhaps even larger than analyzing the genome. The complex …

PepBind: a comprehensive database and computational tool for analysis of protein–peptide interactions

AA Das, OP Sharma, MS Kumar… - Genomics …, 2013 - academic.oup.com
Protein–peptide interactions, where one partner is a globular protein (domain) and the other
is a flexible linear peptide, are key components of cellular processes predominantly in …