Using Monte Carlo to simulate complex polymer systems: Recent progress and outlook

VG Mavrantzas - Frontiers in Physics, 2021 - frontiersin.org
Metropolis Monte Carlo has been employed with remarkable success over the years to
simulate the dense phases of polymer systems. Owing, in particular, to the freedom it …

The relative entropy is fundamental to multiscale and inverse thermodynamic problems

MS Shell - The Journal of chemical physics, 2008 - pubs.aip.org
We show that the relative entropy, S rel≡∑ p T ln (p T/p M)⁠, provides a fundamental and
unifying framework for multiscale analysis and for inverse molecular-thermodynamic …

Density of states–based molecular simulations

S Singh, M Chopra, JJ de Pablo - Annual Review of Chemical …, 2012 - annualreviews.org
One of the central problems in statistical mechanics is that of finding the density of states of a
system. Knowledge of the density of states of a system is equivalent to knowledge of its …

Machine learning interatomic potentials for amorphous zeolitic imidazolate frameworks

N Castel, D André, C Edwards, JD Evans… - Digital …, 2024 - pubs.rsc.org
The detailed understanding of the microscopic structure of amorphous phases of metal–
organic frameworks (MOFs) remains a widely open question: characterization of these …

Phase-space overlap measures. I. Fail-safe bias detection in free energies calculated by molecular simulation

D Wu, DA Kofke - The Journal of chemical physics, 2005 - pubs.aip.org
We consider ways to quantify the overlap of the parts of phase space important to two
systems, labeled A and B⁠. Of interest is how much of the A-important phase space lies in …

Monte Carlo simulations for water adsorption in porous materials: Best practices and new insights

A Datar, M Witman, LC Lin - AIChE Journal, 2021 - Wiley Online Library
Technologies based on water adsorption such as water harvesting from air have
tremendous potential in mitigating important global crises such as water scarcity. An …

Progress and outlook in Monte Carlo simulations

DN Theodorou - Industrial & engineering chemistry research, 2010 - ACS Publications
In 1953, Metropolis et al. 1 introduced an ingenious stochastic method for sampling points in
a multidimensional space, according to a prescribed probability distribution defined on that …

Optimizing the ensemble for equilibration in broad-histogram Monte Carlo simulations

S Trebst, DA Huse, M Troyer - Physical Review E—Statistical, Nonlinear, and …, 2004 - APS
We present an adaptive algorithm which optimizes the statistical-mechanical ensemble in a
generalized broad-histogram Monte Carlo simulation to maximize the system's rate of round …

Statistical-temperature Monte Carlo and molecular dynamics algorithms

J Kim, JE Straub, T Keyes - Physical review letters, 2006 - APS
A simulation method is presented that achieves a flat energy distribution by updating the
statistical temperature instead of the density of states in Wang-Landau sampling. A novel …

Speed-up of Monte Carlo simulations by sampling of rejected states

D Frenkel - Proceedings of the National Academy of …, 2004 - National Acad Sciences
The Markov chain Monte Carlo method is an important tool to estimate the average
properties of systems with a very large number of accessible states. This technique is used …