Best practices in metabarcoding of fungi: from experimental design to results
The development of high‐throughput sequencing (HTS) technologies has greatly improved
our capacity to identify fungi and unveil their ecological roles across a variety of ecosystems …
our capacity to identify fungi and unveil their ecological roles across a variety of ecosystems …
Keystone taxa as drivers of microbiome structure and functioning
S Banerjee, K Schlaeppi… - Nature Reviews …, 2018 - nature.com
Microorganisms have a pivotal role in the functioning of ecosystems. Recent studies have
shown that microbial communities harbour keystone taxa, which drive community …
shown that microbial communities harbour keystone taxa, which drive community …
Climate warming enhances microbial network complexity and stability
Unravelling the relationships between network complexity and stability under changing
climate is a challenging topic in theoretical ecology that remains understudied in the field of …
climate is a challenging topic in theoretical ecology that remains understudied in the field of …
Co-occurrence networks reveal more complexity than community composition in resistance and resilience of microbial communities
Plant response to drought stress involves fungi and bacteria that live on and in plants and in
the rhizosphere, yet the stability of these myco-and micro-biomes remains poorly …
the rhizosphere, yet the stability of these myco-and micro-biomes remains poorly …
microeco: an R package for data mining in microbial community ecology
C Liu, Y Cui, X Li, M Yao - FEMS microbiology ecology, 2021 - academic.oup.com
ABSTRACT A large amount of sequencing data is produced in microbial community ecology
studies using the high-throughput sequencing technique, especially amplicon-sequencing …
studies using the high-throughput sequencing technique, especially amplicon-sequencing …
Erosion reduces soil microbial diversity, network complexity and multifunctionality
While soil erosion drives land degradation, the impact of erosion on soil microbial
communities and multiple soil functions remains unclear. This hinders our ability to assess …
communities and multiple soil functions remains unclear. This hinders our ability to assess …
The plastisphere of biodegradable and conventional microplastics from residues exhibit distinct microbial structure, network and function in plastic-mulching farmland
The inhomogeneity of plastisphere and soil may result in different microbial communities,
thus potentially affecting soil functions. Biodegradable plastics offer an alternative to …
thus potentially affecting soil functions. Biodegradable plastics offer an alternative to …
iNAP: an integrated network analysis pipeline for microbiome studies
Integrated network analysis pipeline (iNAP) is an online analysis pipeline for generating and
analyzing comprehensive ecological networks in microbiome studies. It is implemented in …
analyzing comprehensive ecological networks in microbiome studies. It is implemented in …
Soil microbial network complexity predicts ecosystem function along elevation gradients on the Tibetan Plateau
W Chen, J Wang, X Chen, Z Meng, R Xu… - Soil Biology and …, 2022 - Elsevier
The contributions of soil microbial diversity for the multifunctionality of ecosystem functions
remain little understood despite the well-known importance of soil microbial communities for …
remain little understood despite the well-known importance of soil microbial communities for …
Reduced microbial stability in the active layer is associated with carbon loss under alpine permafrost degradation
Permafrost degradation may induce soil carbon (C) loss, critical for global C cycling, and be
mediated by microbes. Despite larger C stored within the active layer of permafrost regions …
mediated by microbes. Despite larger C stored within the active layer of permafrost regions …