Biophysical processes supporting the diversity of microbial life in soil

R Tecon, D Or - FEMS microbiology reviews, 2017 - academic.oup.com
Soil, the living terrestrial skin of the Earth, plays a central role in supporting life and is home
to an unimaginable diversity of microorganisms. This review explores key drivers for …

Insights from 20 years of bacterial genome sequencing

M Land, L Hauser, SR Jun, I Nookaew… - Functional & integrative …, 2015 - Springer
Since the first two complete bacterial genome sequences were published in 1995, the
science of bacteria has dramatically changed. Using third-generation DNA sequencing, it is …

[图书][B] Методы биодиагностики наземных экосистем.

Е Даденко, Ю Акименко, С Колесников, К Казеев - 2022 - books.google.com
В книге приведены методы исследований экологического состояния наземных
экосистем. Приведена методология проведения комплексных исследований …

[HTML][HTML] Plant microbiome structure and benefits for sustainable agriculture

LF Santos, FL Olivares - Current Plant Biology, 2021 - Elsevier
Plants are colonized by a multitude of micro-organisms, collectively called “microbiome,”
and which play essential roles in the niches they inhabit. The potential of the microbiome …

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

D McDonald, MN Price, J Goodrich… - The ISME …, 2012 - academic.oup.com
Reference phylogenies are crucial for providing a taxonomic framework for interpretation of
marker gene and metagenomic surveys, which continue to reveal novel species at a …

Emergent properties of microbial activity in heterogeneous soil microenvironments: different research approaches are slowly converging, yet major challenges remain

PC Baveye, W Otten, A Kravchenko… - Frontiers in …, 2018 - frontiersin.org
Over the last 60 years, soil microbiologists have accumulated a wealth of experimental data
showing that the bulk, macroscopic parameters (eg, granulometry, pH, soil organic matter …

Soil enzymology: classical and molecular approaches

P Nannipieri, L Giagnoni, G Renella, E Puglisi… - Biology and fertility of …, 2012 - Springer
It is still problematic to use enzyme activities as indicators of soil functions because:(1)
enzyme assays determine potential and not real enzyme activities;(2) the meaning of …

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications

P Yilmaz, R Kottmann, D Field, R Knight, JR Cole… - Nature …, 2011 - nature.com
Here we present a standard developed by the Genomic Standards Consortium (GSC) for
reporting marker gene sequences—the minimum information about a marker gene …

The ecological coherence of high bacterial taxonomic ranks

L Philippot, SGE Andersson, TJ Battin… - Nature Reviews …, 2010 - nature.com
The species is a fundamental unit of biological organization, but its relevance for Bacteria
and Archaea is still hotly debated. Even more controversial is whether the deeper branches …

Insights into antibiotic resistance through metagenomic approaches

R Schmieder, R Edwards - Future microbiology, 2012 - Taylor & Francis
The consequences of bacterial infections have been curtailed by the introduction of a wide
range of antibiotics. However, infections continue to be a leading cause of mortality, in part …