[HTML][HTML] A neural network-based joint learning approach for biomedical entity and relation extraction from biomedical literature

L Luo, Z Yang, M Cao, L Wang, Y Zhang… - Journal of biomedical …, 2020 - Elsevier
Recently joint modeling methods of entity and relation exhibit more promising results than
traditional pipelined methods in general domain. However, they are inappropriate for the …

Formal concept analysis: from knowledge discovery to knowledge processing

S Ferré, M Huchard, M Kaytoue, SO Kuznetsov… - A Guided Tour of …, 2020 - Springer
In this chapter, we introduce Formal Concept Analysis (FCA) and some of its extensions.
FCA is a formalism based on lattice theory aimed at data analysis and knowledge …

Identifying protein-protein interaction using tree LSTM and structured attention

M Ahmed, J Islam, MR Samee… - 2019 IEEE 13th …, 2019 - ieeexplore.ieee.org
Identifying interactions between proteins is important to understand underlying biological
processes. Extracting a protein-protein interaction (PPI) from the raw text is often very …

Pattern structures and concept lattices for data mining and knowledge processing

M Kaytoue, V Codocedo, A Buzmakov… - Machine Learning and …, 2015 - Springer
This article aims at presenting recent advances in Formal Concept Analysis (2010-2015),
especially when the question is dealing with complex data (numbers, graphs, sequences …

Multi-granularity sequential neural network for document-level biomedical relation extraction

X Liu, K Tan, S Dong - Information Processing & Management, 2021 - Elsevier
Document-level biomedical relation extraction aims to extract the relation between multiple
mentions of entities throughout an entire document. However, most methods suffer from long …

Concepts of neighbors and their application to instance-based learning on relational data

HA Ayats, P Cellier, S Ferré - International Journal of Approximate …, 2024 - Elsevier
Abstract Knowledge graphs and other forms of relational data have become a widespread
kind of data, and powerful methods to analyze and learn from them are needed. Formal …

ParaDis and Démonette–from theory to resources for derivational paradigms

F Namer, N Hathout - The Prague Bulletin of Mathematical …, 2020 - shs.hal.science
In this article, we trace the genesis of the French derivational database Démonette and show
how its architecture and content stem from recent theoretical developments in derivational …

Identifying Protein-Protein Interaction using Tree-Transformers and Heterogeneous Graph Neural Network

SS Roy, R Mercer - The International FLAIRS Conference …, 2023 - journals.flvc.org
For a better understanding of the underlying biological mechanisms, it is crucial to identify
the reciprocity between proteins. Often, extracting such interactions between proteins from …

A two-step approach for explainable relation extraction

H Ayats, P Cellier, S Ferré - International Symposium on Intelligent Data …, 2022 - Springer
Abstract Knowledge Graphs (KG) offer easy-to-process information. An important issue to
build a KG from texts is the Relation Extraction (RE) task that identifies and labels …

Extracting relations in texts with concepts of neighbours

H Ayats, P Cellier, S Ferré - … , ICFCA 2021, Strasbourg, France, June 29 …, 2021 - Springer
During the last decade, the need for reliable and massive Knowledge Graphs (KG)
increased. KGs can be created in several ways: manually with forms or automatically with …