Bioinformatic approaches for studying the microbiome of fermented food
LH Walsh, M Coakley, AM Walsh… - Critical Reviews in …, 2023 - Taylor & Francis
High-throughput DNA sequencing-based approaches continue to revolutionise our
understanding of microbial ecosystems, including those associated with fermented foods …
understanding of microbial ecosystems, including those associated with fermented foods …
Standardized multi-omics of Earth's microbiomes reveals microbial and metabolite diversity
Despite advances in sequencing, lack of standardization makes comparisons across studies
challenging and hampers insights into the structure and function of microbial communities …
challenging and hampers insights into the structure and function of microbial communities …
Translocation of viable gut microbiota to mesenteric adipose drives formation of creeping fat in humans
A mysterious feature of Crohn's disease (CD) is the extra-intestinal manifestation of"
creeping fat"(CrF), defined as expansion of mesenteric adipose tissue around the inflamed …
creeping fat"(CrF), defined as expansion of mesenteric adipose tissue around the inflamed …
Applications and comparison of dimensionality reduction methods for microbiome data
G Armstrong, G Rahman, C Martino… - Frontiers in …, 2022 - frontiersin.org
Dimensionality reduction techniques are a key component of most microbiome studies,
providing both the ability to tractably visualize complex microbiome datasets and the starting …
providing both the ability to tractably visualize complex microbiome datasets and the starting …
Acetate reprograms gut microbiota during alcohol consumption
Liver damage due to chronic alcohol use is among the most prevalent liver diseases.
Alcohol consumption frequency is a strong factor of microbiota variance. Here we use …
Alcohol consumption frequency is a strong factor of microbiota variance. Here we use …
Oral mucosal breaks trigger anti-citrullinated bacterial and human protein antibody responses in rheumatoid arthritis
Periodontal disease is more common in individuals with rheumatoid arthritis (RA) who have
detectable anti-citrullinated protein antibodies (ACPAs), implicating oral mucosal …
detectable anti-citrullinated protein antibodies (ACPAs), implicating oral mucosal …
Microplastics as hubs enriching antibiotic-resistant bacteria and pathogens in municipal activated sludge
Microplastics can serve as carriers of antibiotic-resistant bacteria (ARB) and pathogens,
representing a pressing concern to aquatic biota and human health. Activated sludge units …
representing a pressing concern to aquatic biota and human health. Activated sludge units …
Terrestrial-type nitrogen-fixing symbiosis between seagrass and a marine bacterium
Symbiotic N2-fixing microorganisms have a crucial role in the assimilation of nitrogen by
eukaryotes in nitrogen-limited environments,–. Particularly among land plants, N2-fixing …
eukaryotes in nitrogen-limited environments,–. Particularly among land plants, N2-fixing …
Effects of 'healthy'fecal microbiota transplantation against the deterioration of depression in fawn-hooded rats
Depression is a recurrent, heterogeneous mood disorder occurring in more than 260 million
people worldwide. Gut microbiome dysbiosis is associated with the development of …
people worldwide. Gut microbiome dysbiosis is associated with the development of …
[HTML][HTML] Air pollution exposure is associated with the gut microbiome as revealed by shotgun metagenomic sequencing
Animal work indicates exposure to air pollutants may alter the composition of the gut
microbiota. This study examined relationships between air pollutants and the gut …
microbiota. This study examined relationships between air pollutants and the gut …