Diversity, versatility and complexity of bacterial gene regulation mechanisms: opportunities and drawbacks for applications in synthetic biology
I Bervoets, D Charlier - FEMS microbiology reviews, 2019 - academic.oup.com
Gene expression occurs in two essential steps: transcription and translation. In bacteria, the
two processes are tightly coupled in time and space, and highly regulated. Tight regulation …
two processes are tightly coupled in time and space, and highly regulated. Tight regulation …
From dirt to industrial applications: Pseudomonas putida as a synthetic biology chassis for hosting harsh biochemical reactions
Highlights•SynBio needs chassis with superior genetic, biochemical, and physiological
traits.•Environmental bacteria are endowed with many advantageous metabolic properties.• …
traits.•Environmental bacteria are endowed with many advantageous metabolic properties.• …
[PDF][PDF] Subcellular organization: a critical feature of bacterial cell replication
IV Surovtsev, C Jacobs-Wagner - Cell, 2018 - cell.com
Spatial organization is a hallmark of all living systems. Even bacteria, the smallest forms of
cellular life, display defined shapes and complex internal organization, showcasing a highly …
cellular life, display defined shapes and complex internal organization, showcasing a highly …
[HTML][HTML] Architecture of the Escherichia coli nucleoid
SC Verma, Z Qian, SL Adhya - PLoS genetics, 2019 - journals.plos.org
How genomes are organized within cells and how the 3D architecture of a genome
influences cellular functions are significant questions in biology. A bacterial genomic DNA …
influences cellular functions are significant questions in biology. A bacterial genomic DNA …
[HTML][HTML] Organization of DNA in mammalian mitochondria
G Farge, M Falkenberg - International Journal of Molecular Sciences, 2019 - mdpi.com
As with all organisms that must organize and condense their DNA to fit within the limited
volume of a cell or a nucleus, mammalian mitochondrial DNA (mtDNA) is packaged into …
volume of a cell or a nucleus, mammalian mitochondrial DNA (mtDNA) is packaged into …
Nucleoid-associated proteins shape chromatin structure and transcriptional regulation across the bacterial kingdom
HM Amemiya, J Schroeder, PL Freddolino - Transcription, 2021 - Taylor & Francis
Genome architecture has proven to be critical in determining gene regulation across almost
all domains of life. While many of the key components and mechanisms of eukaryotic …
all domains of life. While many of the key components and mechanisms of eukaryotic …
[PDF][PDF] Structure and function of archaeal histones
B Henneman, C Van Emmerik, T Brouwer… - Biophysical …, 2018 - cell.com
The genomes of all organisms throughout the tree of life are compacted and organized in
chromatin by association of chromatin proteins. Eukaryotic genomes encode histones, which …
chromatin by association of chromatin proteins. Eukaryotic genomes encode histones, which …
Transcription of bacterial chromatin
BA Shen, R Landick - Journal of molecular biology, 2019 - Elsevier
Decades of research have probed the interplay between chromatin (genomic DNA
associated with proteins and RNAs) and transcription by RNA polymerase (RNAP) in all …
associated with proteins and RNAs) and transcription by RNA polymerase (RNAP) in all …
Mechanism of environmentally driven conformational changes that modulate H-NS DNA-bridging activity
RA van der Valk, J Vreede, L Qin, GF Moolenaar… - Elife, 2017 - elifesciences.org
Bacteria frequently need to adapt to altered environmental conditions. Adaptation requires
changes in gene expression, often mediated by global regulators of transcription. The …
changes in gene expression, often mediated by global regulators of transcription. The …
Optical and force nanoscopy in microbiology
J Xiao, YF Dufrêne - Nature microbiology, 2016 - nature.com
Microbial cells have developed sophisticated multicomponent structures and machineries to
govern basic cellular processes, such as chromosome segregation, gene expression, cell …
govern basic cellular processes, such as chromosome segregation, gene expression, cell …