Equilibrium mechanisms of self-limiting assembly

MF Hagan, GM Grason - Reviews of modern physics, 2021 - APS
Self-assembly is a ubiquitous process in synthetic and biological systems, broadly defined
as the spontaneous organization of multiple subunits (macromolecules, particles, etc.) into …

Mechanical properties of viruses analyzed by atomic force microscopy: a virological perspective

MG Mateu - Virus research, 2012 - Elsevier
The advent of nanoscience and nanotechnology and the development of atomic force
microscopy and other single-molecule techniques are leading to a renewed look at viruses …

Modeling viral capsid assembly

MF Hagan - Advances in Chemical Physics: Volume 155, 2014 - Wiley Online Library
Viruses play a role in a significant portion of human diseases, as well as those of other
animals, plants, and bacteria. This chapter focuses on the use of theoretical and …

All-atom molecular dynamics of the HBV capsid reveals insights into biological function and cryo-EM resolution limits

JA Hadden, JR Perilla, CJ Schlicksup… - Elife, 2018 - elifesciences.org
The hepatitis B virus capsid represents a promising therapeutic target. Experiments suggest
the capsid must be flexible to function; however, capsid structure and dynamics have not …

Multiscale modeling of hepatitis B virus capsid assembly and its dimorphism

F Mohajerani, B Tyukodi, CJ Schlicksup… - ACS …, 2022 - ACS Publications
Hepatitis B virus (HBV) is an endemic, chronic virus that leads to 800000 deaths per year.
Central to the HBV lifecycle, the viral core has a protein capsid assembled from many copies …

Mechanics of bacteriophage maturation

WH Roos, I Gertsman, ER May… - Proceedings of the …, 2012 - National Acad Sciences
Capsid maturation with large-scale subunit reorganization occurs in virtually all viruses that
use a motor to package nucleic acid into preformed particles. A variety of ensemble studies …

Computer simulation studies of self-assembling macromolecules

W Shinoda, R DeVane, ML Klein - Current Opinion in Structural Biology, 2012 - Elsevier
Coarse-grained (CG) molecular models are now widely used to understand the structure
and functionality of macromolecular self-assembling systems. In the last few years …

Integrin and defensin modulate the mechanical properties of adenovirus

J Snijder, VS Reddy, ER May, WH Roos… - Journal of …, 2013 - Am Soc Microbiol
The propensity for capsid disassembly and uncoating of human adenovirus is modulated by
interactions with host cell molecules like integrins and alpha defensins. Here, we use atomic …

Optical trapping, sizing, and probing acoustic modes of a small virus

J Burkhartsmeyer, Y Wang, KS Wong, R Gordon - Applied Sciences, 2020 - mdpi.com
Featured Application Sizing and measurement of vibrational frequencies of viruses could be
useful for diagnostic purposes, as well as for targeted destruction via resonant excitation of …

The role of the encapsulated cargo in microcompartment assembly

F Mohajerani, MF Hagan - PLoS computational biology, 2018 - journals.plos.org
Bacterial microcompartments are large, roughly icosahedral shells that assemble around
enzymes and reactants involved in certain metabolic pathways in bacteria. Motivated by …