Counting the abundance of all the distinct kmers in biological sequence data is a
fundamental step in bioinformatics. These applications include de novo genome assembly …

Gene sequence clustering is very basic and important in computational biology and
bioinformatics for the study of phylogenetic relationships and gene function prediction, etc …

De novo genome assembly is a fundamental problem in the field of bioinformatics, that aims
to assemble the DNA sequence of an unknown genome from numerous short DNA …

De novo genome assembly is one of the most important and challenging computational
problems in modern genomics; further, it shares algorithms and communication patterns …

De Bruijn graph construction is the first step in de novo assemblers to connect input reads
into a complete sequence without a reference genome. This step is both time and memory …

De novo genome assembly is a fundamental problem in the field of bioinformatics, that aims
to assemble the DNA sequence of an unknown genome from numerous short DNA …

The advent of high-throughput DNA sequencing techniques has permitted very high quality
de novo assemblies of genomes, but raise an issue of requiring large amounts of computer …

In this thesis we discuss computational methods to deal with DNA sequences provided by
high throughput sequencers. We will mostly focus on the reconstruction of genomes from …

Background De novo genome assembly is a technique that builds the genome of a
specimen using overlaps of genomic fragments without additional work with reference …

De novo assemblers construct genome sequences from small fragments, without using any
reference genome. Specifically, they represent the fragments in a De Bruijn graph and …