Spinalnet: Deep neural network with gradual input

HMD Kabir, M Abdar, A Khosravi… - IEEE Transactions …, 2022 - ieeexplore.ieee.org
Deep neural networks (DNNs) have achieved the state-of-the-art (SOTA) performance in
numerous fields. However, DNNs need high computation times, and people always expect …

Deep transformers and convolutional neural network in identifying DNA N6-methyladenine sites in cross-species genomes

NQK Le, QT Ho - Methods, 2022 - Elsevier
As one of the most common post-transcriptional epigenetic modifications, N6-methyladenine
(6 mA), plays an essential role in various cellular processes and disease pathogenesis …

Bu-net: Brain tumor segmentation using modified u-net architecture

MU Rehman, SB Cho, JH Kim, KT Chong - Electronics, 2020 - mdpi.com
The semantic segmentation of a brain tumor is of paramount importance for its treatment and
prevention. Recently, researches have proposed various neural network-based …

Brainseg-net: Brain tumor mr image segmentation via enhanced encoder–decoder network

MU Rehman, SB Cho, J Kim, KT Chong - Diagnostics, 2021 - mdpi.com
Efficient segmentation of Magnetic Resonance (MR) brain tumor images is of the utmost
value for the diagnosis of tumor region. In recent years, advancement in the field of neural …

CSatDTA: prediction of drug–target binding affinity using convolution model with self-attention

A Ghimire, H Tayara, Z Xuan, KT Chong - International journal of …, 2022 - mdpi.com
Drug discovery, which aids to identify potential novel treatments, entails a broad range of
fields of science, including chemistry, pharmacology, and biology. In the early stages of drug …

[HTML][HTML] Heuristic analysis of genomic sequence processing models for high efficiency prediction: A statistical perspective

AR Durge, DD Shrimankar, AD Sawarkar - Current Genomics, 2022 - ncbi.nlm.nih.gov
Genome sequences indicate a wide variety of characteristics, which include species and
sub-species type, genotype, diseases, growth indicators, yield quality, etc. To analyze and …

Deep6mAPred: A CNN and Bi-LSTM-based deep learning method for predicting DNA N6-methyladenosine sites across plant species

X Tang, P Zheng, X Li, H Wu, DQ Wei, Y Liu, G Huang - Methods, 2022 - Elsevier
Abstract DNA N6-methyladenine (6mA) is a key DNA modification, which plays versatile
roles in the cellular processes, including regulation of gene expression, DNA repair, and …

[HTML][HTML] DCNN-4mC: Densely connected neural network based N4-methylcytosine site prediction in multiple species

MU Rehman, H Tayara, KT Chong - Computational and structural …, 2021 - Elsevier
Abstract DNA N4-methylcytosine (4mC) being a significant genetic modification holds a
dominant role in controlling different biological functions, ie, DNA replication, DNA repair …

A review of methods for predicting DNA N6-methyladenine sites

K Han, J Wang, Y Wang, L Zhang, M Yu… - Briefings in …, 2023 - academic.oup.com
Abstract Deoxyribonucleic acid (DNA) N6-methyladenine plays a vital role in various
biological processes, and the accurate identification of its site can provide a more …

pcPromoter-CNN: a CNN-based prediction and classification of promoters

M Shujaat, A Wahab, H Tayara, KT Chong - Genes, 2020 - mdpi.com
A promoter is a small region within the DNA structure that has an important role in initiating
transcription of a specific gene in the genome. Different types of promoters are recognized …