RNA-directed DNA methylation: an epigenetic pathway of increasing complexity

MA Matzke, RA Mosher - Nature Reviews Genetics, 2014 - nature.com
RNA-directed DNA methylation (RdDM) is the major small RNA-mediated epigenetic
pathway in plants. RdDM requires a specialized transcriptional machinery that comprises …

RNA interference in the nucleus: roles for small RNAs in transcription, epigenetics and beyond

SE Castel, RA Martienssen - Nature Reviews Genetics, 2013 - nature.com
A growing number of functions are emerging for RNA interference (RNAi) in the nucleus, in
addition to well-characterized roles in post-transcriptional gene silencing in the cytoplasm …

Classification and comparison of small RNAs from plants

MJ Axtell - Annual review of plant biology, 2013 - annualreviews.org
Regulatory small RNAs, which range in size from 20 to 24 nucleotides, are ubiquitous
components of endogenous plant transcriptomes, as well as common responses to …

The Plant Vascular System: Evolution, Development and FunctionsF

WJ Lucas, A Groover, R Lichtenberger… - Journal of integrative …, 2013 - Wiley Online Library
Contents I. Introduction 295 II. Evolution of the Plant Vascular System 295 III. Phloem
Development & Differentiation 300 IV. Molecular Mechanisms Underlying Xylem Cell …

The Diversity, Biogenesis, and Activities of Endogenous Silencing Small RNAs in Arabidopsis

NG Bologna, O Voinnet - Annual review of plant biology, 2014 - annualreviews.org
In eukaryotic RNA silencing, RNase-III classes of enzymes in the Dicer family process
double-stranded RNA of cellular or exogenous origin into small-RNA (sRNA) molecules …

ShortStack: comprehensive annotation and quantification of small RNA genes

MJ Axtell - Rna, 2013 - rnajournal.cshlp.org
Small RNA sequencing allows genome-wide discovery, categorization, and quantification of
genes producing regulatory small RNAs. Many tools have been described for annotation …

Unravelling rootstock× scion interactions to improve food security

A Albacete, C Martínez-Andújar… - Journal of …, 2015 - academic.oup.com
While much recent science has focused on understanding and exploiting root traits as new
opportunities for crop improvement, the use of rootstocks has enhanced productivity of …

PsRobot: a web-based plant small RNA meta-analysis toolbox

HJ Wu, YK Ma, T Chen, M Wang… - Nucleic acids …, 2012 - academic.oup.com
Small RNAs (smRNAs) in plants, mainly microRNAs and small interfering RNAs, play
important roles in both transcriptional and post-transcriptional gene regulation. The broad …

[HTML][HTML] Small RNAs in plants: recent development and application for crop improvement

A Kamthan, A Chaudhuri, M Kamthan… - Frontiers in plant …, 2015 - frontiersin.org
The phenomenon of RNA interference (RNAi) which involves sequence-specific gene
regulation by small non-coding RNAs, ie, small interfering RNA (siRNA) and microRNA …

[HTML][HTML] Genetic and epigenetic control of plant heat responses

J Liu, L Feng, J Li, Z He - Frontiers in plant science, 2015 - frontiersin.org
Plants have evolved sophisticated genetic and epigenetic regulatory systems to respond
quickly to unfavorable environmental conditions such as heat, cold, drought, and pathogen …