The Angiosperm Terrestrial Revolution and the origins of modern biodiversity

MJ Benton, P Wilf, H Sauquet - New Phytologist, 2022 - Wiley Online Library
Biodiversity today has the unusual property that 85% of plant and animal species live on
land rather than in the sea, and half of these live in tropical rainforests. An explosive boost to …

[HTML][HTML] Maternal selection of human embryos in early gestation: insights from recurrent miscarriage

JJ Brosens, PR Bennett, VM Abrahams… - Seminars in cell & …, 2022 - Elsevier
Compared to most mammals, human pregnancy is unusual in that it involves chromosomally
diverse embryos, cyclical breakdown and regeneration of the uterine mucosa, and intimate …

A global catalog of whole-genome diversity from 233 primate species

LFK Kuderna, H Gao, MC Janiak, M Kuhlwilm, JD Orkin… - Science, 2023 - science.org
The rich diversity of morphology and behavior displayed across primate species provides an
informative context in which to study the impact of genomic diversity on fundamental …

Inferring the mammal tree: species-level sets of phylogenies for questions in ecology, evolution, and conservation

NS Upham, JA Esselstyn, W Jetz - PLoS biology, 2019 - journals.plos.org
Big, time-scaled phylogenies are fundamental to connecting evolutionary processes to
modern biodiversity patterns. Yet inferring reliable phylogenetic trees for thousands of …

A species-level timeline of mammal evolution integrating phylogenomic data

S Álvarez-Carretero, AU Tamuri, M Battini… - Nature, 2022 - nature.com
High-throughput sequencing projects generate genome-scale sequence data for species-
level phylogenies,–. However, state-of-the-art Bayesian methods for inferring timetrees are …

A genomic timescale for placental mammal evolution

NM Foley, VC Mason, AJ Harris, KR Bredemeyer… - Science, 2023 - science.org
The precise pattern and timing of speciation events that gave rise to all living placental
mammals remain controversial. We provide a comprehensive phylogenetic analysis of …

Interrogating genomic-scale data for Squamata (lizards, snakes, and amphisbaenians) shows no support for key traditional morphological relationships

FT Burbrink, FG Grazziotin, RA Pyron… - Systematic …, 2020 - academic.oup.com
Genomics is narrowing uncertainty in the phylogenetic structure for many amniote groups.
For one of the most diverse and species-rich groups, the squamate reptiles (lizards, snakes …

PhyKIT: a broadly applicable UNIX shell toolkit for processing and analyzing phylogenomic data

JL Steenwyk, TJ Buida III, AL Labella, Y Li… - …, 2021 - academic.oup.com
Motivation Diverse disciplines in biology process and analyze multiple sequence alignments
(MSAs) and phylogenetic trees to evaluate their information content, infer evolutionary …

Prolonged morphological expansion of spiny-rayed fishes following the end-Cretaceous

A Ghezelayagh, RC Harrington, ED Burress… - Nature Ecology & …, 2022 - nature.com
Spiny-rayed fishes (Acanthomorpha) dominate modern marine habitats and account for
more than a quarter of all living vertebrate species. Previous time-calibrated phylogenies …

Genomes, fossils, and the concurrent rise of modern birds and flowering plants in the Late Cretaceous

S Wu, FE Rheindt, J Zhang, J Wang… - Proceedings of the …, 2024 - National Acad Sciences
The phylogeny and divergence timing of the Neoavian radiation remain controversial
despite recent progress. We analyzed the genomes of 124 species across all Neoavian …