DNA nanotechnology from the test tube to the cell

YJ Chen, B Groves, RA Muscat, G Seelig - Nature nanotechnology, 2015 - nature.com
Abstract The programmability of Watson–Crick base pairing, combined with a decrease in
the cost of synthesis, has made DNA a widely used material for the assembly of molecular …

Dynamic DNA nanotechnology using strand-displacement reactions

DY Zhang, G Seelig - Nature chemistry, 2011 - nature.com
The specificity and predictability of Watson–Crick base pairing make DNA a powerful and
versatile material for engineering at the nanoscale. This has enabled the construction of a …

Control of DNA strand displacement kinetics using toehold exchange

DY Zhang, E Winfree - Journal of the American Chemical Society, 2009 - ACS Publications
DNA is increasingly being used as the engineering material of choice for the construction of
nanoscale circuits, structures, and motors. Many of these enzyme-free constructions function …

Programming biomolecular self-assembly pathways

P Yin, HMT Choi, CR Calvert, NA Pierce - Nature, 2008 - nature.com
In nature, self-assembling and disassembling complexes of proteins and nucleic acids
bound to a variety of ligands perform intricate and diverse dynamic functions. In contrast …

Engineering entropy-driven reactions and networks catalyzed by DNA

DY Zhang, AJ Turberfield, B Yurke, E Winfree - Science, 2007 - science.org
Artificial biochemical circuits are likely to play as large a role in biological engineering as
electrical circuits have played in the engineering of electromechanical devices. Toward that …

Structural, mechanical, and thermodynamic properties of a coarse-grained DNA model

TE Ouldridge, AA Louis, JPK Doye - The Journal of chemical physics, 2011 - pubs.aip.org
We explore in detail the structural, mechanical, and thermodynamic properties of a coarse-
grained model of DNA similar to that recently introduced in a study of DNA nanotweezers …

DNA nanomachines

J Bath, AJ Turberfield - Nature nanotechnology, 2007 - nature.com
We are learning to build synthetic molecular machinery from DNA. This research is inspired
by biological systems in which individual molecules act, singly and in concert, as specialized …

A bipedal DNA Brownian motor with coordinated legs

T Omabegho, R Sha, NC Seeman - science, 2009 - science.org
A substantial challenge in engineering molecular motors is designing mechanisms to
coordinate the motion between multiple domains of the motor so as to bias random thermal …

Sequence-dependent thermodynamics of a coarse-grained DNA model

P Šulc, F Romano, TE Ouldridge, L Rovigatti… - The Journal of …, 2012 - pubs.aip.org
originally designed to reproduce the properties of DNA molecules with average sequences.
The new parametrization introduces sequence-dependent stacking and base-pairing …

Direct observation of stepwise movement of a synthetic molecular transporter

SFJ Wickham, M Endo, Y Katsuda, K Hidaka… - Nature …, 2011 - nature.com
Controlled motion at the nanoscale can be achieved by using Watson–Crick base-pairing to
direct the assembly and operation of a molecular transport system consisting of a track, a …