[HTML][HTML] Protein domain identification methods and online resources
Y Wang, H Zhang, H Zhong, Z Xue - Computational and structural …, 2021 - Elsevier
Protein domains are the basic units of proteins that can fold, function, and evolve
independently. Knowledge of protein domains is critical for protein classification …
independently. Knowledge of protein domains is critical for protein classification …
Shifting the limits in wheat research and breeding using a fully annotated reference genome
International Wheat Genome Sequencing Consortium … - Science, 2018 - science.org
INTRODUCTION Wheat (Triticum aestivum L.) is the most widely cultivated crop on Earth,
contributing about a fifth of the total calories consumed by humans. Consequently, wheat …
contributing about a fifth of the total calories consumed by humans. Consequently, wheat …
Clades of huge phages from across Earth's ecosystems
Bacteriophages typically have small genomes and depend on their bacterial hosts for
replication. Here we sequenced DNA from diverse ecosystems and found hundreds of …
replication. Here we sequenced DNA from diverse ecosystems and found hundreds of …
The distinction of CPR bacteria from other bacteria based on protein family content
Candidate phyla radiation (CPR) bacteria separate phylogenetically from other bacteria, but
the organismal distribution of their protein families remains unclear. Here, we leveraged …
the organismal distribution of their protein families remains unclear. Here, we leveraged …
Integrative analysis of large scale transcriptome data draws a comprehensive landscape of Phaeodactylum tricornutum genome and evolutionary origin of diatoms
Diatoms are one of the most successful and ecologically important groups of eukaryotic
phytoplankton in the modern ocean. Deciphering their genomes is a key step towards better …
phytoplankton in the modern ocean. Deciphering their genomes is a key step towards better …
Groundwater Elusimicrobia are metabolically diverse compared to gut microbiome Elusimicrobia and some have a novel nitrogenase paralog
Currently described members of Elusimicrobia, a relatively recently defined phylum, are
animal-associated and rely on fermentation. However, free-living Elusimicrobia have been …
animal-associated and rely on fermentation. However, free-living Elusimicrobia have been …
Community‐level responses to iron availability in open ocean plankton ecosystems
L Caputi, Q Carradec, D Eveillard… - Global …, 2019 - Wiley Online Library
Predicting responses of plankton to variations in essential nutrients is hampered by limited
in situ measurements, a poor understanding of community composition, and the lack of …
in situ measurements, a poor understanding of community composition, and the lack of …
Protein family content uncovers lineage relationships and bacterial pathway maintenance mechanisms in DPANN archaea
DPANN are small-celled archaea that are generally predicted to be symbionts, and in some
cases are known episymbionts of other archaea. As the monophyly of the DPANN remains …
cases are known episymbionts of other archaea. As the monophyly of the DPANN remains …
Hidden variation in polyploid wheat drives local adaptation
LJ Gardiner, R Joynson, J Omony… - Genome …, 2018 - genome.cshlp.org
Wheat has been domesticated into a large number of agricultural environments and has the
ability to adapt to diverse environments. To understand this process, we survey genotype …
ability to adapt to diverse environments. To understand this process, we survey genotype …
A multi-source domain annotation pipeline for quantitative metagenomic and metatranscriptomic functional profiling
A Ugarte, R Vicedomini, J Bernardes, A Carbone - Microbiome, 2018 - Springer
Background Biochemical and regulatory pathways have until recently been thought and
modelled within one cell type, one organism and one species. This vision is being …
modelled within one cell type, one organism and one species. This vision is being …