[HTML][HTML] Transformer-based deep learning for predicting protein properties in the life sciences
Recent developments in deep learning, coupled with an increasing number of sequenced
proteins, have led to a breakthrough in life science applications, in particular in protein …
proteins, have led to a breakthrough in life science applications, in particular in protein …
[HTML][HTML] Deep learning methods in protein structure prediction
M Torrisi, G Pollastri, Q Le - Computational and Structural Biotechnology …, 2020 - Elsevier
Abstract Protein Structure Prediction is a central topic in Structural Bioinformatics. Since
the'60s statistical methods, followed by increasingly complex Machine Learning and recently …
the'60s statistical methods, followed by increasingly complex Machine Learning and recently …
From machine learning to deep learning: Advances in scoring functions for protein–ligand docking
Molecule docking has been regarded as a routine tool for drug discovery, but its accuracy
highly depends on the reliability of scoring functions (SFs). With the rapid development of …
highly depends on the reliability of scoring functions (SFs). With the rapid development of …
Heart diagnosis using deep neural network
Worldwide, heart disease is the leading cause of mortality. By providing proper therapy,
early identification of heart disease can lower the likelihood of the illness advancing to a …
early identification of heart disease can lower the likelihood of the illness advancing to a …
DescribePROT: database of amino acid-level protein structure and function predictions
We present DescribePROT, the database of predicted amino acid-level descriptors of
structure and function of proteins. DescribePROT delivers a comprehensive collection of 13 …
structure and function of proteins. DescribePROT delivers a comprehensive collection of 13 …
Structure and elevator mechanism of the mammalian sodium/proton exchanger NHE9
I Winkelmann, R Matsuoka, PF Meier, D Shutin… - The EMBO …, 2020 - embopress.org
Abstract Na+/H+ exchangers (NHEs) are ancient membrane‐bound nanomachines that
work to regulate intracellular pH, sodium levels and cell volume. NHE activities contribute to …
work to regulate intracellular pH, sodium levels and cell volume. NHE activities contribute to …
Different methods, techniques and their limitations in protein structure prediction: A review
V Bongirwar, AS Mokhade - Progress in Biophysics and Molecular Biology, 2022 - Elsevier
Because of the increase in different types of diseases in human habitats, demands for
designing various types of drugs are also increasing. Protein and its structure play a very …
designing various types of drugs are also increasing. Protein and its structure play a very …
SAINT: self-attention augmented inception-inside-inception network improves protein secondary structure prediction
Motivation Protein structures provide basic insight into how they can interact with other
proteins, their functions and biological roles in an organism. Experimental methods (eg X …
proteins, their functions and biological roles in an organism. Experimental methods (eg X …
Deep learning for mining protein data
The recent emergence of deep learning to characterize complex patterns of protein big data
reveals its potential to address the classic challenges in the field of protein data mining …
reveals its potential to address the classic challenges in the field of protein data mining …
[HTML][HTML] Deep learning for protein secondary structure prediction: Pre and post-AlphaFold
DP Ismi, R Pulungan - Computational and structural biotechnology …, 2022 - Elsevier
This paper aims to provide a comprehensive review of the trends and challenges of deep
neural networks for protein secondary structure prediction (PSSP). In recent years, deep …
neural networks for protein secondary structure prediction (PSSP). In recent years, deep …