Prospects for riboswitch discovery and analysis
RR Breaker - Molecular cell, 2011 - cell.com
An expanding number of metabolite-binding riboswitch classes are being discovered in the
noncoding portions of bacterial genomes. Findings over the last decade indicate that …
noncoding portions of bacterial genomes. Findings over the last decade indicate that …
Riboswitch distribution, structure, and function in bacteria
N Pavlova, D Kaloudas, R Penchovsky - Gene, 2019 - Elsevier
Riboswitches are gene control elements that directly bind to specific ligands to regulate
gene expression without the need for proteins. They are found in all three domains of life …
gene expression without the need for proteins. They are found in all three domains of life …
Riboswitch diversity and distribution
PJ McCown, KA Corbino, S Stav, ME Sherlock… - Rna, 2017 - rnajournal.cshlp.org
Riboswitches are commonly used by bacteria to detect a variety of metabolites and ions to
regulate gene expression. To date, nearly 40 different classes of riboswitches have been …
regulate gene expression. To date, nearly 40 different classes of riboswitches have been …
Riboswitches in eubacteria sense the second messenger c-di-AMP
JW Nelson, N Sudarsan, K Furukawa… - Nature chemical …, 2013 - nature.com
Cyclic di-adenosine monophosphate (c-di-AMP) is a recently discovered bacterial second
messenger implicated in the control of cell wall metabolism, osmotic stress responses and …
messenger implicated in the control of cell wall metabolism, osmotic stress responses and …
Metabolism of free guanidine in bacteria is regulated by a widespread riboswitch class
The guanidyl moiety is a component of fundamental metabolites, including the amino acid
arginine, the energy carrier creatine, and the nucleobase guanine. Curiously, reports …
arginine, the energy carrier creatine, and the nucleobase guanine. Curiously, reports …
The ubiquitous yybP-ykoY riboswitch is a manganese-responsive regulatory element
M Dambach, M Sandoval, TB Updegrove… - Molecular cell, 2015 - cell.com
The highly structured, cis-encoded RNA elements known as riboswitches modify gene
expression upon binding a wide range of molecules. The yybP-ykoY motif was one of the …
expression upon binding a wide range of molecules. The yybP-ykoY motif was one of the …
Riboswitches for the alarmone ppGpp expand the collection of RNA-based signaling systems
ME Sherlock, N Sudarsan… - Proceedings of the …, 2018 - National Acad Sciences
Riboswitches are noncoding portions of certain mRNAs that bind metabolite, coenzyme,
signaling molecule, or inorganic ion ligands and regulate gene expression. Most known …
signaling molecule, or inorganic ion ligands and regulate gene expression. Most known …
Mn2+-sensing mechanisms of yybP-ykoY orphan riboswitches
Gene regulation in cis by riboswitches is prevalent in bacteria. The yybP-ykoY riboswitch
family is quite widespread, yet its ligand and function remained unknown. Here, we …
family is quite widespread, yet its ligand and function remained unknown. Here, we …
An ancient riboswitch class in bacteria regulates purine biosynthesis and one-carbon metabolism
PB Kim, JW Nelson, RR Breaker - Molecular cell, 2015 - cell.com
Summary Over 30 years ago, ZTP (5-aminoimidazole-4-carboxamide riboside 5′-
triphosphate), a modified purine biosynthetic intermediate, was proposed to signal 10-formyl …
triphosphate), a modified purine biosynthetic intermediate, was proposed to signal 10-formyl …
Tandem riboswitches form a natural Boolean logic gate to control purine metabolism in bacteria
ME Sherlock, N Sudarsan, S Stav, RR Breaker - Elife, 2018 - elifesciences.org
Gene control systems sometimes interpret multiple signals to set the expression levels of the
genes they regulate. In rare instances, ligand-binding riboswitch aptamers form tandem …
genes they regulate. In rare instances, ligand-binding riboswitch aptamers form tandem …