Structured community transitions explain the switching capacity of microbial systems
Microbial systems appear to exhibit a relatively high switching capacity of moving back and
forth among few dominant communities (taxon memberships). While this switching behavior …
forth among few dominant communities (taxon memberships). While this switching behavior …
[HTML][HTML] Core species and interactions prominent in fish-associated microbiome dynamics
Background In aquatic ecosystems, the health and performance of fish depend greatly on
the dynamics of microbial community structure in the background environment. Nonetheless …
the dynamics of microbial community structure in the background environment. Nonetheless …
A taxonomy of multiple stable states in complex ecological communities
Natural systems are built from multiple interconnected units, making their dynamics,
functioning and fragility notoriously hard to predict. A fragility scenario of particular relevance …
functioning and fragility notoriously hard to predict. A fragility scenario of particular relevance …
[HTML][HTML] Facilitative interaction networks in experimental microbial community dynamics
Facilitative interactions between microbial species are ubiquitous in various types of
ecosystems on the Earth. Therefore, inferring how entangled webs of interspecific …
ecosystems on the Earth. Therefore, inferring how entangled webs of interspecific …
The concept of balance in microbiome research
MA O'Malley - BioEssays, 2024 - Wiley Online Library
Microbiome research is changing how ecosystems, including animal bodies, are
understood. In the case of humans, microbiome knowledge is transforming medical …
understood. In the case of humans, microbiome knowledge is transforming medical …
[HTML][HTML] Metagenomic analysis of ecological niche overlap and community collapse in microbiome dynamics
Species utilizing the same resources often fail to coexist for extended periods of time. Such
competitive exclusion mechanisms potentially underly microbiome dynamics, causing …
competitive exclusion mechanisms potentially underly microbiome dynamics, causing …
Deterministic and stochastic processes generating alternative states of microbiomes
The structure of microbiomes is often classified into discrete or semi-discrete types
potentially differing in community-scale functional profiles. Elucidating the mechanisms that …
potentially differing in community-scale functional profiles. Elucidating the mechanisms that …
[HTML][HTML] An ecological network approach for detecting and validating influential organisms for rice growth
How to achieve sustainable food production while reducing environmental impacts is a
major concern in agricultural science, and advanced breeding techniques are promising for …
major concern in agricultural science, and advanced breeding techniques are promising for …
Toward a fundamental theory of taxon transitions in microbial communities
CB Ogbunugafor, S Yitbarek - Proceedings of the National …, 2024 - National Acad Sciences
Technological breakthroughs have fostered an appreciation for the microbiome and
revolutionized our understanding of many parts of the tree of life. These discoveries have …
revolutionized our understanding of many parts of the tree of life. These discoveries have …
Soil prokaryotic and fungal biome structures associated with crop disease status across the Japan Archipelago
Archaea, bacteria, and fungi in the soil are increasingly recognized as determinants of
agricultural productivity and sustainability. A crucial step for exploring soil microbiomes with …
agricultural productivity and sustainability. A crucial step for exploring soil microbiomes with …