Mutation load: the fitness of individuals in populations where deleterious alleles are abundant

AF Agrawal, MC Whitlock - Annual Review of Ecology, Evolution …, 2012 - annualreviews.org
Many multicellular eukaryotes have reasonably high per-generation mutation rates.
Consequently, most populations harbor an abundance of segregating deleterious alleles …

The causes of epistasis

JAGM De Visser, TF Cooper… - Proceedings of the …, 2011 - royalsocietypublishing.org
Since Bateson's discovery that genes can suppress the phenotypic effects of other genes,
gene interactions—called epistasis—have been the topic of a vast research effort. Systems …

Negative epistasis between beneficial mutations in an evolving bacterial population

AI Khan, DM Dinh, D Schneider, RE Lenski, TF Cooper - Science, 2011 - science.org
Epistatic interactions between mutations play a prominent role in evolutionary theories.
Many studies have found that epistasis is widespread, but they have rarely considered …

Environmental duress and epistasis: how does stress affect the strength of selection on new mutations?

AF Agrawal, MC Whitlock - Trends in ecology & evolution, 2010 - cell.com
To an evolutionary geneticist, the most important property of a new mutation is its effect on
fitness. Stress is a reduction in fitness that can also alter the selection on new mutations …

The fitness effect of mutations across environments: Fisher's geometrical model with multiple optima

G Martin, T Lenormand - Evolution, 2015 - academic.oup.com
When are mutations beneficial in one environment and deleterious in another? More
generally, what is the relationship between mutation effects across environments? These …

Systematic evaluation of genome-wide metabolic landscapes in lactic acid bacteria reveals diet-and strain-specific probiotic idiosyncrasies

L Koduru, M Lakshmanan, YQ Lee, PL Ho, PY Lim… - Cell Reports, 2022 - cell.com
Lactic acid bacteria (LAB) are well known to elicit health benefits in humans, but their
functional metabolic landscapes remain unexplored. Here, we analyze differences in …

Fast growth increases the selective advantage of a mutation arising recurrently during evolution under metal limitation

HH Chou, J Berthet, CJ Marx - PLoS genetics, 2009 - journals.plos.org
Understanding the evolution of biological systems requires untangling the molecular
mechanisms that connect genetic and environmental variations to their physiological …

Antibiotic resistance and stress in the light of Fisher's model

S Trindade, A Sousa, I Gordo - Evolution, 2012 - academic.oup.com
The role of mutations in evolution depends upon the distribution of their effects on fitness.
This distribution is likely to depend on the environment. Indeed genotype-by-environment …

The Fitness Cost of Rifampicin Resistance in Pseudomonas aeruginosa Depends on Demand for RNA Polymerase

AR Hall, JC Iles, RC MacLean - Genetics, 2011 - academic.oup.com
Bacterial resistance to antibiotics usually incurs a fitness cost in the absence of selecting
drugs, and this cost of resistance plays a key role in the spread of antibiotic resistance in …

Measuring growth rate in high-throughput growth phenotyping

A Blomberg - Current opinion in biotechnology, 2011 - Elsevier
Growth rate is an important variable and parameter in biology with a central role in
evolutionary, functional genomics, and systems biology studies. In this review the pros and …