[HTML][HTML] CRISPR/Cas9-based engineering of the epigenome

J Pulecio, N Verma, E Mejía-Ramírez, D Huangfu… - Cell stem cell, 2017 - cell.com
Determining causal relationships between distinct chromatin features and gene expression,
and ultimately cell behavior, remains a major challenge. Recent developments in targetable …

A decade of exploring the mammalian sperm epigenome: paternal epigenetic and transgenerational inheritance

A Champroux, J Cocquet, J Henry-Berger… - Frontiers in Cell and …, 2018 - frontiersin.org
The past decade has seen a tremendous increase in interest and progress in the field of
sperm epigenetics. Studies have shown that chromatin regulation during male germline …

DNA demethylation pathways: additional players and regulators

M Bochtler, A Kolano, GL Xu - Bioessays, 2017 - Wiley Online Library
DNA demethylation can occur passively by “dilution” of methylation marks by DNA
replication, or actively and independently of DNA replication. Direct conversion of 5 …

Role of base excision “repair” enzymes in erasing epigenetic marks from DNA

AC Drohat, CT Coey - Chemical reviews, 2016 - ACS Publications
Base excision repair (BER) is one of several DNA repair pathways found in all three
domains of life. BER counters the mutagenic and cytotoxic effects of damage that occurs …

OGG1 is essential in oxidative stress induced DNA demethylation

X Zhou, Z Zhuang, W Wang, L He, H Wu, Y Cao, F Pan… - Cellular signalling, 2016 - Elsevier
DNA demethylation is an essential cellular activity to regulate gene expression; however,
the mechanism that triggers DNA demethylation remains unknown. Furthermore, DNA …

APOBEC3A efficiently deaminates methylated, but not TET-oxidized, cytosine bases in DNA

EK Schutsky, CS Nabel, AKF Davis… - Nucleic acids …, 2017 - academic.oup.com
AID/APOBEC family enzymes are best known for deaminating cytosine bases to uracil in
single-stranded DNA, with characteristic sequence preferences that can produce mutational …

Repair of oxidatively induced DNA damage by DNA glycosylases: mechanisms of action, substrate specificities and excision kinetics

M Dizdaroglu, E Coskun, P Jaruga - Mutation Research/Reviews in …, 2017 - Elsevier
Endogenous and exogenous reactive species cause oxidatively induced DNA damage in
living organisms by a variety of mechanisms. As a result, a plethora of mutagenic and/or …

Active DNA demethylation by DNA repair: Facts and uncertainties

D Schuermann, AR Weber, P Schär - DNA repair, 2016 - Elsevier
Pathways that control and modulate DNA methylation patterning in mammalian cells were
poorly understood for a long time, although their importance in establishing and maintaining …

Gadd45 in DNA demethylation and DNA repair

G Chandramouly - Gadd45 stress sensor genes, 2022 - Springer
Growth arrest and DNA damage 45 (Gadd45) family genes, Gadd45A, Gadd45B, and
GADD45 G are implicated as stress sensors that are rapidly induced upon genotoxic …

[HTML][HTML] Cellular response to endogenous DNA damage: DNA base modifications in gene expression regulation

DL Bordin, L Lirussi, H Nilsen - DNA repair, 2021 - Elsevier
The integrity of the genetic information is continuously challenged by numerous genotoxic
insults, most frequently in the form of oxidation, alkylation or deamination of the bases that …