[HTML][HTML] Manure as a potential hotspot for antibiotic resistance dissemination by horizontal gene transfer events

T Lima, S Domingues, GJ Da Silva - Veterinary sciences, 2020 - mdpi.com
The increasing demand for animal-derived foods has led to intensive and large-scale
livestock production with the consequent formation of large amounts of manure. Livestock …

The microbial pan-genome

D Medini, C Donati, H Tettelin, V Masignani… - Current opinion in …, 2005 - Elsevier
A decade after the beginning of the genomic era, the question of how genomics can
describe a bacterial species has not been fully addressed. Experimental data have shown …

[HTML][HTML] The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes

TJ Treangen, BD Ondov, S Koren, AM Phillippy - Genome biology, 2014 - Springer
Whole-genome sequences are now available for many microbial species and clades,
however existing whole-genome alignment methods are limited in their ability to perform …

Explaining microbial population genomics through phage predation

F Rodriguez-Valera, AB Martin-Cuadrado… - Nature …, 2009 - nature.com
The remarkable diversity of genes within the pool of prokaryotic genomes belonging to the
same species or pan-genome is difficult to reconcile with the widely accepted paradigm …

Probiotics: from isolation to application

P Shokryazdan, M Faseleh Jahromi… - Journal of the …, 2017 - Taylor & Francis
Probiotics have become highly recognized as supplements for humans and animals
because of their beneficial effects on health and well-being. The present review aims to …

Microbiology and treatment of acute apical abscesses

JF Siqueira Jr, IN Rôças - Clinical microbiology reviews, 2013 - Am Soc Microbiol
Acute apical abscess is the most common form of dental abscess and is caused by infection
of the root canal of the tooth. It is usually localized intraorally, but in some cases the apical …

Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world

EV Koonin, YI Wolf - Nucleic acids research, 2008 - academic.oup.com
The first bacterial genome was sequenced in 1995, and the first archaeal genome in 1996.
Soon after these breakthroughs, an exponential rate of genome sequencing was …

Microbial population and community dynamics on plant roots and their feedbacks on plant communities

JD Bever, TG Platt, ER Morton - Annual review of microbiology, 2012 - annualreviews.org
The composition of the soil microbial community can be altered dramatically due to
association with individual plant species, and these effects on the microbial community can …

Spatial scaling of microbial biodiversity

J Green, BJM Bohannan - Trends in ecology & evolution, 2006 - cell.com
A central goal in ecology is to understand the spatial scaling of biodiversity. Patterns in the
spatial distribution of organisms provide important clues about the underlying mechanisms …

[图书][B] The rhizosphere: biochemistry and organic substances at the soil-plant interface

R Pinton, Z Varanini, P Nannipieri - 2007 - taylorfrancis.com
In the rhizosphere, exudates from plants and microorganisms as well as stable soil organic
matter influence processes that can control plant growth, microbial infections, and nutrient …