A review of deep learning applications for genomic selection

OA Montesinos-López, A Montesinos-López… - BMC genomics, 2021 - Springer
Abstract Background Several conventional genomic Bayesian (or no Bayesian) prediction
methods have been proposed including the standard additive genetic effect model for which …

[HTML][HTML] Heterosis and hybrid crop breeding: a multidisciplinary review

MR Labroo, AJ Studer, JE Rutkoski - Frontiers in Genetics, 2021 - frontiersin.org
Although hybrid crop varieties are among the most popular agricultural innovations, the
rationale for hybrid crop breeding is sometimes misunderstood. Hybrid breeding is slower …

Genomic Selection and Association Mapping in Rice (Oryza sativa): Effect of Trait Genetic Architecture, Training Population Composition, Marker Number and …

J Spindel, H Begum, D Akdemir, P Virk, B Collard… - PLoS …, 2015 - journals.plos.org
Genomic Selection (GS) is a new breeding method in which genome-wide markers are used
to predict the breeding value of individuals in a breeding population. GS has been shown to …

Polygenic modeling with Bayesian sparse linear mixed models

X Zhou, P Carbonetto, M Stephens - PLoS genetics, 2013 - journals.plos.org
Both linear mixed models (LMMs) and sparse regression models are widely used in
genetics applications, including, recently, polygenic modeling in genome-wide association …

Whole-genome regression and prediction methods applied to plant and animal breeding

G de Los Campos, JM Hickey, R Pong-Wong… - Genetics, 2013 - academic.oup.com
Genomic-enabled prediction is becoming increasingly important in animal and plant
breeding and is also receiving attention in human genetics. Deriving accurate predictions of …

Extension of the Bayesian alphabet for genomic selection

D Habier, RL Fernando, K Kizilkaya, DJ Garrick - BMC bioinformatics, 2011 - Springer
Abstract Background Two Bayesian methods, BayesC π and BayesD π, were developed for
genomic prediction to address the drawback of BayesA and BayesB regarding the impact of …

[HTML][HTML] Hot topic: a unified approach to utilize phenotypic, full pedigree, and genomic information for genetic evaluation of Holstein final score

I Aguilar, I Misztal, DL Johnson, A Legarra… - Journal of dairy …, 2010 - Elsevier
The first national single-step, full-information (phenotype, pedigree, and marker genotype)
genetic evaluation was developed for final score of US Holsteins. Data included final scores …

[图书][B] Genetic data analysis for plant and animal breeding

F Isik, J Holland, C Maltecca - 2017 - Springer
We wrote this book to fill the gap between textbooks of quantitative genetic theory and
software manuals that provide details on analytical methods but little context or perspective …

Genomic selection in plant breeding: a comparison of models

N Heslot, HP Yang, ME Sorrells, JL Jannink - Crop science, 2012 - Wiley Online Library
Simulation and empirical studies of genomic selection (GS) show accuracies sufficient to
generate rapid genetic gains. However, with the increased popularity of GS approaches …

Genomic selection in plant breeding: from theory to practice

JL Jannink, AJ Lorenz, H Iwata - Briefings in functional …, 2010 - academic.oup.com
We intuitively believe that the dramatic drop in the cost of DNA marker information we have
experienced should have immediate benefits in accelerating the delivery of crop varieties …