Quantitative control for stoichiometric protein synthesis
Bacterial protein synthesis rates have evolved to maintain preferred stoichiometries at
striking precision, from the components of protein complexes to constituents of entire …
striking precision, from the components of protein complexes to constituents of entire …
The diversity of Shine-Dalgarno sequences sheds light on the evolution of translation initiation
ABSTRACT Shine-Dalgarno (SD) sequences, the core element of prokaryotic ribosome-
binding sites, facilitate mRNA translation by base-pair interaction with the anti-SD (aSD) …
binding sites, facilitate mRNA translation by base-pair interaction with the anti-SD (aSD) …
Quality control of protein synthesis in the early elongation stage
A Nagao, Y Nakanishi, Y Yamaguchi, Y Mishina… - Nature …, 2023 - nature.com
In the early stage of bacterial translation, peptidyl-tRNAs frequently dissociate from the
ribosome (pep-tRNA drop-off) and are recycled by peptidyl-tRNA hydrolase. Here, we …
ribosome (pep-tRNA drop-off) and are recycled by peptidyl-tRNA hydrolase. Here, we …
[HTML][HTML] Mechanistic dissection of premature translation termination induced by acidic residues-enriched nascent peptide
Y Chadani, T Kanamori, T Niwa, K Ichihara… - Cell Reports, 2023 - cell.com
Ribosomes polymerize nascent peptides through repeated inter-subunit rearrangements
between the classic and hybrid states. The peptidyl-tRNA, the intermediate species during …
between the classic and hybrid states. The peptidyl-tRNA, the intermediate species during …
Ubiquitous mRNA decay fragments in E. coli redefine the functional transcriptome
Bacterial mRNAs have short life cycles, in which transcription is rapidly followed by
translation and degradation within seconds to minutes. The resulting diversity of mRNA …
translation and degradation within seconds to minutes. The resulting diversity of mRNA …
The landscape of translational stall sites in bacteria revealed by monosome and disome profiling
Ribosome pauses are associated with various cotranslational events and determine the fate
of mRNAs and proteins. Thus, the identification of precise pause sites across the …
of mRNAs and proteins. Thus, the identification of precise pause sites across the …
Boric acid intercepts 80S ribosome migration from AUG-stop by stabilizing eRF1
M Tanaka, T Yokoyama, H Saito, M Nishimoto… - Nature Chemical …, 2024 - nature.com
In response to environmental changes, cells flexibly and rapidly alter gene expression
through translational controls. In plants, the translation of NIP5; 1, a boric acid diffusion …
through translational controls. In plants, the translation of NIP5; 1, a boric acid diffusion …
Translation complex stabilization on messenger RNA and footprint profiling to study the RNA responses and dynamics of protein biosynthesis in the cells
NE Shirokikh - Critical reviews in biochemistry and molecular …, 2022 - Taylor & Francis
During protein biosynthesis, ribosomes bind to messenger (m) RNA, locate its protein-
coding information, and translate the nucleotide triplets sequentially as codons into the …
coding information, and translate the nucleotide triplets sequentially as codons into the …
The context of the ribosome binding site in mRNAs defines specificity of action of kasugamycin, an inhibitor of translation initiation
Y Zhang, NA Aleksashin, D Klepacki… - Proceedings of the …, 2022 - National Acad Sciences
Kasugamycin (KSG) is an aminoglycoside antibiotic widely used in agriculture and exhibits
considerable medical potential. Previous studies suggested that KSG interferes with …
considerable medical potential. Previous studies suggested that KSG interferes with …
Preventing toxicity in toxin-antitoxin systems: An overview of regulatory mechanisms
S Bonabal, F Darfeuille - Biochimie, 2024 - Elsevier
Toxin-antitoxin systems (TAs) are generally two-component genetic modules present in
almost every prokaryotic genome. The production of the free and active toxin is able to …
almost every prokaryotic genome. The production of the free and active toxin is able to …