[HTML][HTML] Missing data and the design of phylogenetic analyses
JJ Wiens - Journal of biomedical informatics, 2006 - Elsevier
Concerns about the deleterious effects of missing data may often determine which
characters and taxa are included in phylogenetic analyses. For example, researchers may …
characters and taxa are included in phylogenetic analyses. For example, researchers may …
The supermatrix approach to systematics
A de Queiroz, J Gatesy - Trends in ecology & evolution, 2007 - cell.com
Recent reviews of the construction of large phylogenies have focused on supertree methods
that involve separate analyses of data sets and subsequent integration of the resulting trees …
that involve separate analyses of data sets and subsequent integration of the resulting trees …
Combining phylogenomic and supermatrix approaches, and a time-calibrated phylogeny for squamate reptiles (lizards and snakes) based on 52 genes and 4162 …
Y Zheng, JJ Wiens - Molecular phylogenetics and evolution, 2016 - Elsevier
Two common approaches for estimating phylogenies in species-rich groups are to:(i)
sample many loci for few species (eg phylogenomic approach), or (ii) sample many species …
sample many loci for few species (eg phylogenomic approach), or (ii) sample many species …
A phylogeny and revised classification of Squamata, including 4161 species of lizards and snakes
Background The extant squamates (> 9400 known species of lizards and snakes) are one of
the most diverse and conspicuous radiations of terrestrial vertebrates, but no studies have …
the most diverse and conspicuous radiations of terrestrial vertebrates, but no studies have …
[HTML][HTML] Phylogenetics, classification, and biogeography of the treefrogs (Amphibia: Anura: Arboranae)
WE Duellman, AB Marion, SB Hedges - Zootaxa, 2016 - mapress.com
A phylogenetic analysis of sequences from 503 species of hylid frogs and four outgroup taxa
resulted in 16,128 aligned sites of 19 genes. The molecular data were subjected to a …
resulted in 16,128 aligned sites of 19 genes. The molecular data were subjected to a …
A large-scale phylogeny of Amphibia including over 2800 species, and a revised classification of extant frogs, salamanders, and caecilians
The extant amphibians are one of the most diverse radiations of terrestrial vertebrates (>
6800 species). Despite much recent focus on their conservation, diversification, and …
6800 species). Despite much recent focus on their conservation, diversification, and …
Biogeographic analysis reveals ancient continental vicariance and recent oceanic dispersal in amphibians
RA Pyron - Systematic biology, 2014 - academic.oup.com
Amphibia comprises over 7000 extant species distributed in almost every ecosystem on
every continent except Antarctica. Most species also show high specificity for particular …
every continent except Antarctica. Most species also show high specificity for particular …
[HTML][HTML] Molecular systematics of terraranas (Anura: Brachycephaloidea) with an assessment of the effects of alignment and optimality criteria
Brachycephaloidea is a monophyletic group of frogs with more than 1000 species
distributed throughout the New World tropics, subtropics, and Andean regions. Recently, the …
distributed throughout the New World tropics, subtropics, and Andean regions. Recently, the …
Frog phylogeny: a time-calibrated, species-level tree based on hundreds of loci and 5,242 species
Large-scale, time-calibrated phylogenies from supermatrix studies have become crucial for
evolutionary and ecological studies in many groups of organisms. However, in frogs (anuran …
evolutionary and ecological studies in many groups of organisms. However, in frogs (anuran …
Phylogenomics and a posteriori data partitioning resolve the Cretaceous angiosperm radiation Malpighiales
The angiosperm order Malpighiales includes∼ 16,000 species and constitutes up to 40% of
the understory tree diversity in tropical rain forests. Despite remarkable progress in …
the understory tree diversity in tropical rain forests. Despite remarkable progress in …