[HTML][HTML] Missing data and the design of phylogenetic analyses

JJ Wiens - Journal of biomedical informatics, 2006 - Elsevier
Concerns about the deleterious effects of missing data may often determine which
characters and taxa are included in phylogenetic analyses. For example, researchers may …

The supermatrix approach to systematics

A de Queiroz, J Gatesy - Trends in ecology & evolution, 2007 - cell.com
Recent reviews of the construction of large phylogenies have focused on supertree methods
that involve separate analyses of data sets and subsequent integration of the resulting trees …

Combining phylogenomic and supermatrix approaches, and a time-calibrated phylogeny for squamate reptiles (lizards and snakes) based on 52 genes and 4162 …

Y Zheng, JJ Wiens - Molecular phylogenetics and evolution, 2016 - Elsevier
Two common approaches for estimating phylogenies in species-rich groups are to:(i)
sample many loci for few species (eg phylogenomic approach), or (ii) sample many species …

A phylogeny and revised classification of Squamata, including 4161 species of lizards and snakes

RA Pyron, FT Burbrink, JJ Wiens - BMC evolutionary biology, 2013 - Springer
Background The extant squamates (> 9400 known species of lizards and snakes) are one of
the most diverse and conspicuous radiations of terrestrial vertebrates, but no studies have …

[HTML][HTML] Phylogenetics, classification, and biogeography of the treefrogs (Amphibia: Anura: Arboranae)

WE Duellman, AB Marion, SB Hedges - Zootaxa, 2016 - mapress.com
A phylogenetic analysis of sequences from 503 species of hylid frogs and four outgroup taxa
resulted in 16,128 aligned sites of 19 genes. The molecular data were subjected to a …

A large-scale phylogeny of Amphibia including over 2800 species, and a revised classification of extant frogs, salamanders, and caecilians

RA Pyron, JJ Wiens - Molecular phylogenetics and evolution, 2011 - Elsevier
The extant amphibians are one of the most diverse radiations of terrestrial vertebrates (>
6800 species). Despite much recent focus on their conservation, diversification, and …

Biogeographic analysis reveals ancient continental vicariance and recent oceanic dispersal in amphibians

RA Pyron - Systematic biology, 2014 - academic.oup.com
Amphibia comprises over 7000 extant species distributed in almost every ecosystem on
every continent except Antarctica. Most species also show high specificity for particular …

[HTML][HTML] Molecular systematics of terraranas (Anura: Brachycephaloidea) with an assessment of the effects of alignment and optimality criteria

JM Padial, T Grant, DR Frost - Zootaxa, 2014 - biotaxa.org
Brachycephaloidea is a monophyletic group of frogs with more than 1000 species
distributed throughout the New World tropics, subtropics, and Andean regions. Recently, the …

Frog phylogeny: a time-calibrated, species-level tree based on hundreds of loci and 5,242 species

DM Portik, JW Streicher, JJ Wiens - Molecular Phylogenetics and Evolution, 2023 - Elsevier
Large-scale, time-calibrated phylogenies from supermatrix studies have become crucial for
evolutionary and ecological studies in many groups of organisms. However, in frogs (anuran …

Phylogenomics and a posteriori data partitioning resolve the Cretaceous angiosperm radiation Malpighiales

Z Xi, BR Ruhfel, H Schaefer… - Proceedings of the …, 2012 - National Acad Sciences
The angiosperm order Malpighiales includes∼ 16,000 species and constitutes up to 40% of
the understory tree diversity in tropical rain forests. Despite remarkable progress in …