BANKSY unifies cell typing and tissue domain segmentation for scalable spatial omics data analysis

V Singhal, N Chou, J Lee, Y Yue, J Liu, WK Chock… - Nature Genetics, 2024 - nature.com
Spatial omics data are clustered to define both cell types and tissue domains. We present
Building Aggregates with a Neighborhood Kernel and Spatial Yardstick (BANKSY), an …

A Deep Learning-based Pipeline for Segmenting the Cerebral Cortex Laminar Structure in Histology Images

J Wang, R Gong, S Heidari, M Rogers, T Tani, H Abe… - Neuroinformatics, 2024 - Springer
Characterizing the anatomical structure and connectivity between cortical regions is a critical
step towards understanding the information processing properties of the brain and will help …

Resiliency to Alzheimer's disease neuropathology can be distinguished from dementia using cortical astrogliosis imaging

S Barsoum, CS Latimer, A Nolan, A Barrett, K Chang… - bioRxiv, 2024 - biorxiv.org
Despite the presence of significant Alzheimer's disease (AD) pathology, characterized by
amyloid β (Aβ) plaques and phosphorylated tau (pTau) tangles, some cognitively normal …