A beginner's guide to tissue clearing

P Ariel - The international journal of biochemistry & cell biology, 2017 - Elsevier
The last decade has seen a proliferation of tissue clearing methods that render large
biological samples transparent and allow unprecedented three-dimensional views of …

Biomedical applications of tissue clearing and three-dimensional imaging in health and disease

MV Gomez-Gaviro, D Sanderson, J Ripoll, M Desco - Iscience, 2020 - cell.com
Summary Three-dimensional (3D) optical imaging techniques can expand our knowledge
about physiological and pathological processes that cannot be fully understood with 2D …

Macrophage epithelial reprogramming underlies mycobacterial granuloma formation and promotes infection

MR Cronan, RW Beerman, AF Rosenberg, JW Saelens… - Immunity, 2016 - cell.com
Mycobacterium tuberculosis infection in humans triggers formation of granulomas, which are
tightly organized immune cell aggregates that are the central structure of tuberculosis …

[HTML][HTML] A non-canonical type 2 immune response coordinates tuberculous granuloma formation and epithelialization

MR Cronan, EJ Hughes, WJ Brewer, G Viswanathan… - Cell, 2021 - cell.com
The central pathogen-immune interface in tuberculosis is the granuloma, a complex host
immune structure that dictates infection trajectory and physiology. Granuloma macrophages …

An ancestral mycobacterial effector promotes dissemination of infection

JW Saelens, MI Sweeney, G Viswanathan, AM Xet-Mull… - Cell, 2022 - cell.com
The human pathogen Mycobacterium tuberculosis typically causes lung disease but can
also disseminate to other tissues. We identified a M. tuberculosis (Mtb) outbreak presenting …

A peninsular structure coordinates asynchronous differentiation with morphogenesis to generate pancreatic islets

N Sharon, R Chawla, J Mueller, J Vanderhooft… - Cell, 2019 - cell.com
The pancreatic islets of Langerhans regulate glucose homeostasis. The loss of insulin-
producing β cells within islets results in diabetes, and islet transplantation from cadaveric …

Hydrogel-tissue chemistry: principles and applications

V Gradinaru, J Treweek, K Overton… - Annual review of …, 2018 - annualreviews.org
Over the past five years, a rapidly developing experimental approach has enabled high-
resolution and high-content information retrieval from intact multicellular animal (metazoan) …

Advances in ex situ tissue optical clearing

P Matryba, L Kaczmarek, J Gołąb - Laser & Photonics Reviews, 2019 - Wiley Online Library
Examination of whole organs with subcellular resolution in health, disease, and during
development is necessary to decipher their biological complexity. However, until recently …

High-resolution mapping reveals that microniches in the gastric glands control Helicobacter pylori colonization of the stomach

C Fung, S Tan, M Nakajima, EC Skoog… - PLoS …, 2019 - journals.plos.org
Lifelong infection of the gastric mucosa by Helicobacter pylori can lead to peptic ulcers and
gastric cancer. However, how the bacteria maintain chronic colonization in the face of …

The zebrafish subcortical social brain as a model for studying social behavior disorders

Y Geng, RT Peterson - Disease models & mechanisms, 2019 - journals.biologists.com
Social behaviors are essential for the survival and reproduction of social species. Many, if
not most, neuropsychiatric disorders in humans are either associated with underlying social …