implementing whole genome sequencing (WGS) in clinical practice: advantages, challenges, and future perspectives
The integration of whole genome sequencing (WGS) into all aspects of modern medicine
represents the next step in the evolution of healthcare. Using this technology, scientists and …
represents the next step in the evolution of healthcare. Using this technology, scientists and …
Strong protective effect of the APOL1 p.N264K variant against G2-associated focal segmental glomerulosclerosis and kidney disease
Y Gupta, DJ Friedman, MT McNulty, A Khan… - Nature …, 2023 - nature.com
African Americans have a significantly higher risk of developing chronic kidney disease,
especially focal segmental glomerulosclerosis-, than European Americans. Two coding …
especially focal segmental glomerulosclerosis-, than European Americans. Two coding …
Short-read aligner performance in germline variant identification
R Wilton, AS Szalay - Bioinformatics, 2023 - academic.oup.com
Motivation Read alignment is an essential first step in the characterization of DNA sequence
variation. The accuracy of variant-calling results depends not only on the quality of read …
variation. The accuracy of variant-calling results depends not only on the quality of read …
The size and composition of haplotype reference panels impact the accuracy of imputation from low-pass sequencing in cattle
Background Low-pass sequencing followed by sequence variant genotype imputation is an
alternative to the routine microarray-based genotyping in cattle. However, the impact of …
alternative to the routine microarray-based genotyping in cattle. However, the impact of …
Comparative evaluation of SNVs, indels, and structural variations detected with short-and long-read sequencing data
S Kosugi, C Terao - Human Genome Variation, 2024 - nature.com
Short-and long-read sequencing technologies are routinely used to detect DNA variants,
including SNVs, indels, and structural variations (SVs). However, the differences in the …
including SNVs, indels, and structural variations (SVs). However, the differences in the …
Sequencing technologies and hardware-accelerated parallel computing transform computational genomics research
M Olbrich, L Bartels, I Wohlers - Frontiers in Bioinformatics, 2024 - frontiersin.org
High-throughput sequencing and hardware-accelerated computing have both developed
tremendously within the last decade. In genomics, progress is fueled by new technologies …
tremendously within the last decade. In genomics, progress is fueled by new technologies …
[HTML][HTML] Whole genome sequencing of a family with autosomal dominant features within the oculoauriculovertebral spectrum
AL Petrin, LAM Machado-Paula, A Hinkle, L Hovey… - medRxiv, 2024 - ncbi.nlm.nih.gov
Background: Oculoauriculovertebral Spectrum (OAVS) encompasses a wide variety of
anomalies on derivatives from the first and second pharyngeal arches including …
anomalies on derivatives from the first and second pharyngeal arches including …
Biostatistical Aspects of Whole Genome Sequencing Studies: Preprocessing and Quality Control
RO Betschart, C Riccio, D Aguilera‐Garcia… - Biometrical …, 2024 - Wiley Online Library
Rapid advances in high‐throughput DNA sequencing technologies have enabled large‐
scale whole genome sequencing (WGS) studies. Before performing association analysis …
scale whole genome sequencing (WGS) studies. Before performing association analysis …
GVRP: Genome Variant Refinement Pipeline for variant analysis in non-human species using machine learning
Many investigations of human disease require model systems such as non-human primates
and their associated genome analyses. While DeepVariant excels in calling human genetic …
and their associated genome analyses. While DeepVariant excels in calling human genetic …
Rare And Undiagnosed Liver Diseases: New Insights From Genomic And Single Cell Transcriptomic Analyses
C Konkwo - 2024 - elischolar.library.yale.edu
Chronic liver disease (CLD) is a major global health problem, leading to an estimatedtwo
million annual deaths worldwide. Advances in next generation sequencing (NGS) …
million annual deaths worldwide. Advances in next generation sequencing (NGS) …