Microbial ecology of oxygen minimum zones amidst ocean deoxygenation
AM Long, SK Jurgensen, AR Petchel… - Frontiers in …, 2021 - frontiersin.org
Oxygen minimum zones (OMZs) have substantial effects on the global ecology and
biogeochemical processes of marine microbes. However, the diversity and activity of OMZ …
biogeochemical processes of marine microbes. However, the diversity and activity of OMZ …
Genomic and metabolic adaptations of biofilms to ecological windows of opportunity in glacier-fed streams
In glacier-fed streams, ecological windows of opportunity allow complex microbial biofilms to
develop and transiently form the basis of the food web, thereby controlling key ecosystem …
develop and transiently form the basis of the food web, thereby controlling key ecosystem …
Marine microeukaryote metatranscriptomics: sample processing and bioinformatic workflow recommendations for ecological applications
Microeukaryotes (protists) serve fundamental roles in the marine environment as
contributors to biogeochemical nutrient cycling and ecosystem function. Their activities can …
contributors to biogeochemical nutrient cycling and ecosystem function. Their activities can …
Eukaryotic genomes from a global metagenomic data set illuminate trophic modes and biogeography of ocean plankton
Metagenomics is a powerful method for interpreting the ecological roles and physiological
capabilities of mixed microbial communities. Yet, many tools for processing metagenomic …
capabilities of mixed microbial communities. Yet, many tools for processing metagenomic …
Microeukaryote metabolism across the western North Atlantic Ocean revealed through autonomous underwater profiling
Microeukaryotes are key contributors to marine carbon cycling. Their physiology, ecology,
and interactions with the chemical environment are poorly understood in offshore …
and interactions with the chemical environment are poorly understood in offshore …
VEBA: a modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagenomes
JL Espinoza, CL Dupont - BMC bioinformatics, 2022 - Springer
Background With the advent of metagenomics, the importance of microorganisms and how
their interactions are relevant to ecosystem resilience, sustainability, and human health has …
their interactions are relevant to ecosystem resilience, sustainability, and human health has …
Time-series metagenomics reveals changing protistan ecology of a temperate dimictic lake
Background Protists, single-celled eukaryotic organisms, are critical to food web ecology,
contributing to primary productivity and connecting small bacteria and archaea to higher …
contributing to primary productivity and connecting small bacteria and archaea to higher …
Declines in ice cover are accompanied by light limitation responses and community change in freshwater diatoms
BN Zepernick, EE Chase, ER Denison… - The ISME …, 2024 - academic.oup.com
The rediscovery of diatom blooms embedded within and beneath the Lake Erie ice cover
(2007–2012) ignited interest in psychrophilic adaptations and winter limnology. Subsequent …
(2007–2012) ignited interest in psychrophilic adaptations and winter limnology. Subsequent …
Missing microbial eukaryotes and misleading meta-omic conclusions
Meta-omics is commonly used for large-scale analyses of microbial eukaryotes, including
species or taxonomic group distribution mapping, gene catalog construction, and inference …
species or taxonomic group distribution mapping, gene catalog construction, and inference …
Climate change-related warming reduces thermal sensitivity and modifies metabolic activity of coastal benthic bacterial communities
L Seidel, E Broman, E Nilsson, M Ståhle… - The ISME …, 2023 - academic.oup.com
Besides long-term average temperature increases, climate change is projected to result in a
higher frequency of marine heatwaves. Coastal zones are some of the most productive and …
higher frequency of marine heatwaves. Coastal zones are some of the most productive and …